SMTL ID : 2xiy.1

Protein kinase Pim-1 in complex with fragment-2 from crystallographic fragment screen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x XIY: 2-HYDROXYMETHYL-BENZOIMIDAZOLE(Non-covalent)

XIY.1: 11 residues within 4Å: Chain A: L.32, F.37, V.40, A.53, K.55, E.109, L.162, I.173, D.174 Ligands: CL.3, GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.32, A:A.53, A:L.162 Hydrogen bonds: A:D.174

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: F.118, I.121, D.158, D.222, G.226, D.227 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.158, A:D.222, A:D.227

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: K.55, L.108, I.173, D.174 Ligands: XIY.1 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: Q.115, D.116, D.119 Ligands: XIY.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.116, A:D.116, A:D.116, A:D.119, A:D.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schulz, M.N. et al., Crystallographic Fragment Screen Identifies Cinnamic Acid Derivatives as Starting Points for Potent Pim-1 Inhibitors. Acta Crystallogr.,Sect.D (2011)

Release Date

2011-02-23

Peptides

PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE PIM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE PIM-1

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