SMTL ID : 2xja.4 (3 other biounits)

Structure of MurE from M.tuberculosis with dipeptide and ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: H.395, D.448, G.502 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.448, A:G.502 MG.3: 4 residues within 4Å: Chain A: T.158, T.180, E.220 Ligands: ADP.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.158, A:T.180, A:E.220, H2O.1 MG.5: 5 residues within 4Å: Chain A: K.157, D.247, H.248, K.262 Ligands: UAG.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.248

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 19 residues within 4Å: Chain A: T.154, S.155, G.156, K.157, T.158, T.159, T.180, E.220, N.243, Y.343, N.344, N.347, R.377, L.378, D.392, A.394, S.402, V.403 Ligands: MG.3 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.155, A:G.156, A:K.157, A:T.158, A:T.158, A:T.158, A:T.159, A:N.243, A:Y.343, A:N.347, A:N.347, A:R.377, A:D.392, A:A.394, A:S.402 Water bridges: A:K.157, A:K.157 Salt bridges: A:K.157, A:R.377 pi-Stacking: A:Y.343, A:Y.343

1 x UAG: URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE(Non-covalent)

UAG.4: 19 residues within 4Å: Chain A: L.67, R.68, A.69, Q.70, L.81, G.83, S.84, T.85, T.86, G.88, H.91, L.194, T.195, E.198, S.222, H.224, R.230, H.248 Ligands: MG.5 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.86 Hydrogen bonds: A:L.67, A:A.69, A:Q.70, A:Q.70, A:S.84, A:T.85, A:T.85, A:T.86, A:T.86, A:T.195, A:T.195, A:T.195, A:T.196, A:E.198, A:S.222, A:R.230, A:R.230 Water bridges: A:K.157 Salt bridges: A:K.157, A:R.230, A:H.248 pi-Stacking: A:H.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basavannacharya, C. et al., Essential Residues for the Enzyme Activity of ATP-Dependent Mure Ligase from Mycobacterium Tuberculosis. Protein Cell (2010)

Release Date

2010-08-18

Peptides

UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE

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