- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 8 residues within 4Å:- Chain A: D.72, F.175, H.227, Y.228, K.233, S.269, Y.273
- Ligands: GOL.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.83, A:Y.228, A:K.233
- Water bridges: A:N.268, A:D.270
GOL.3: 8 residues within 4Å:- Chain A: F.301, D.302, I.304, L.339, Q.340, H.341, G.342, I.343
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:F.301, A:Q.340, A:G.342
- Water bridges: A:I.304, A:G.342
GOL.4: 4 residues within 4Å:- Chain A: R.213, F.216, Q.217, R.220
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.213, A:Q.217, A:R.220, A:D.224
- Water bridges: A:Y.169, A:D.221
GOL.5: 7 residues within 4Å:- Chain A: F.175, R.220, V.223, D.224, H.227, Y.228
- Ligands: GOL.2
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.220, A:R.220, A:D.224, A:Y.228, A:Y.228
- Water bridges: A:T.173
GOL.6: 6 residues within 4Å:- Chain A: P.114, T.115, E.392, E.396, Y.452, L.458
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:P.114, A:E.396, A:Y.452, A:L.458
GOL.7: 5 residues within 4Å:- Chain A: D.275, T.279, P.296, W.297, Q.298
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.275, A:Q.298, A:Q.298
- Water bridges: A:W.297
GOL.12: 8 residues within 4Å:- Chain B: D.72, F.175, H.227, Y.228, K.233, S.269, Y.273
- Ligands: GOL.15
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:Y.83, B:Y.83, B:Y.228, B:Y.228, B:K.233
- Water bridges: B:N.268, B:D.270
GOL.13: 8 residues within 4Å:- Chain B: F.301, D.302, I.304, L.339, Q.340, H.341, G.342, I.343
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:F.301, B:Q.340, B:H.341, B:G.342
- Water bridges: B:I.304, B:G.342
GOL.14: 4 residues within 4Å:- Chain B: R.213, F.216, Q.217, R.220
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.213, B:Q.217, B:R.220, B:D.224
- Water bridges: B:D.221
GOL.15: 7 residues within 4Å:- Chain B: F.175, R.220, V.223, D.224, H.227, Y.228
- Ligands: GOL.12
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.220, B:R.220, B:Y.228
GOL.16: 6 residues within 4Å:- Chain B: P.114, T.115, E.392, E.396, Y.452, L.458
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:P.114, B:Y.452, B:L.458
GOL.17: 5 residues within 4Å:- Chain B: D.275, T.279, P.296, W.297, Q.298
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.275, B:Q.298, B:Q.298
- Water bridges: B:Y.271, B:W.297
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.8: 8 residues within 4Å:- Chain A: N.70, M.71, D.72, T.267, N.268, S.269, K.310
- Ligands: MG.9
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:N.70, A:M.71, A:D.72, A:T.267, A:N.268, A:S.269
- Water bridges: A:K.310, A:K.310, A:K.310
- Salt bridges: A:K.310
PO4.18: 8 residues within 4Å:- Chain B: N.70, M.71, D.72, T.267, N.268, S.269, K.310
- Ligands: MG.19
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:N.70, B:M.71, B:D.72, B:D.72, B:N.268, B:S.269
- Water bridges: B:K.310, B:K.310, B:K.310
- Salt bridges: B:K.310
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.9: 4 residues within 4Å:- Chain A: N.70, D.72, D.369
- Ligands: PO4.8
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.72, A:D.369, H2O.15, H2O.15
MG.10: 4 residues within 4Å:- Chain A: Y.475
- Ligands: ATP.1, ATP.11, MG.20
No protein-ligand interaction detected (PLIP)MG.19: 4 residues within 4Å:- Chain B: N.70, D.72, D.369
- Ligands: PO4.18
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.72, B:D.369, H2O.32, H2O.32
MG.20: 4 residues within 4Å:- Chain B: Y.475
- Ligands: ATP.1, MG.10, ATP.11
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wallden, K. et al., Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol. (2011)
- Release Date
- 2011-04-27
- Peptides
- CYTOSOLIC PURINE 5'-NUCLEOTIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wallden, K. et al., Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol. (2011)
- Release Date
- 2011-04-27
- Peptides
- CYTOSOLIC PURINE 5'-NUCLEOTIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A