SMTL ID : 2xjf.1

Crystal structure of the D52N variant of cytosolic 5'-nucleotidase II with a covalently modified Asn52

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x DG2: (2R)-2,3-diphosphoglyceric acid(Non-covalent)

DG2.1: 7 residues within 4Å: Chain A: R.163, K.381, Y.476 Chain B: R.163, K.381, Y.476 Ligands: DG2.5 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Salt bridges: A:R.163, A:K.381, B:R.163, B:K.381, B:K.381 DG2.5: 7 residues within 4Å: Chain A: R.163, K.381, Y.476 Chain B: R.163, K.381, Y.476 Ligands: DG2.1 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.476, B:Y.476 Water bridges: A:R.475 Salt bridges: A:R.163, A:K.381, A:K.381, B:R.163, B:K.381

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: F.302, D.303, L.304, I.305, L.340, Q.341, H.342, G.343, I.344 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.305, A:Q.341, A:H.342, A:G.343 Water bridges: A:G.343 GOL.3: 6 residues within 4Å: Chain A: F.176, R.221, V.224, D.225, H.228, Y.229 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.221, A:R.221, A:D.225 Water bridges: A:N.177 GOL.4: 6 residues within 4Å: Chain A: D.271, Y.272, V.307, D.308, G.329, L.331 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.272 Water bridges: A:K.273, A:L.331 GOL.6: 9 residues within 4Å: Chain B: F.302, D.303, L.304, I.305, L.340, Q.341, H.342, G.343, I.344 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.305, B:Q.341, B:G.343 Water bridges: B:G.343 GOL.7: 6 residues within 4Å: Chain B: F.176, R.221, V.224, D.225, H.228, Y.229 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.221, B:R.221, B:D.225, B:D.225 Water bridges: B:N.177 GOL.8: 6 residues within 4Å: Chain B: D.271, Y.272, V.307, D.308, G.329, L.331 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.272 Water bridges: B:K.273, B:L.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wallden, K. et al., Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol. (2011)

Release Date

2011-03-16

Peptides

CYTOSOLIC PURINE 5'-NUCLEOTIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CYTOSOLIC PURINE 5'-NUCLEOTIDASE

Related Entries With Identical Sequence