SMTL ID : 2xk4.1

Structure of Nek2 bound to aminopyrazine compound 17

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x OL2: 4-[3-amino-6-(3,4,5-trimethoxyphenyl)pyrazin-2-yl]-2-ethoxybenzoic acid(Non-covalent)

OL2.1: 16 residues within 4Å: Chain A: I.14, V.35, K.37, M.86, E.87, Y.88, C.89, E.90, G.92, D.93, S.96, N.146, F.148, G.158, D.159, F.160 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.14, A:K.37, A:F.160 Hydrogen bonds: A:E.87, A:C.89, A:N.146, A:D.159, A:F.160 Salt bridges: A:K.37 pi-Stacking: A:F.148

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: H.277, H.279 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.105, Y.107 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: D.109, E.110, R.239 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: P.65, N.154, H.277, H.279 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: R.235 Ligand excluded by PLIP CL.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whelligan, D.K. et al., Aminopyrazine Inhibitors Binding to an Unusual Inactive Conformation of the Mitotic Kinase Nek2: Sar and Structural Characterization. J.Med.Chem. (2010)

Release Date

2010-10-27

Peptides

SERINE/THREONINE-PROTEIN KINASE NEK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERINE/THREONINE-PROTEIN KINASE NEK2

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