SMTL ID : 2xke.1

Structure of Nek2 bound to Aminipyrazine Compound 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x WI2: 1-[3-amino-6-(3-methoxyphenyl)pyrazin-2-yl]piperidine-4-carboxylic acid(Non-covalent)

WI2.1: 12 residues within 4Å: Chain A: I.14, C.22, V.35, K.37, Y.70, M.86, E.87, Y.88, C.89, G.92, F.148, D.159 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.14, A:F.148 Hydrogen bonds: A:Y.70, A:E.87, A:C.89, A:D.159 Water bridges: A:K.37, A:K.37 Salt bridges: A:K.37

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.105, Y.107 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.234, R.235 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: P.65, N.154, H.277, H.279 Ligand excluded by PLIP CL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whelligan, D.K. et al., Aminopyrazine Inhibitors Binding to an Unusual Inactive Conformation of the Mitotic Kinase Nek2: Sar and Structural Characterization. J.Med.Chem. (2010)

Release Date

2010-11-03

Peptides

SERINE/THREONINE-PROTEIN KINASE NEK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERINE/THREONINE-PROTEIN KINASE NEK2

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