SMTL ID : 2xkf.1

Structure of Nek2 bound to aminopyrazine compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x BX1: 1-[3-amino-6-(3,4,5-trimethoxyphenyl)pyrazin-2-yl]piperidine-4-carboxylic acid(Non-covalent)

BX1.1: 15 residues within 4Å: Chain A: I.14, C.22, V.35, K.37, Y.70, M.86, E.87, Y.88, C.89, E.90, G.92, D.93, S.96, F.148, D.159 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.14, A:F.148 Hydrogen bonds: A:Y.70, A:E.87, A:C.89, A:D.159 Water bridges: A:F.160 Salt bridges: A:K.37

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.105, Y.107 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: P.65, N.154, K.156, H.277, H.279 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.234, R.235 Ligand excluded by PLIP CL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whelligan, D.K. et al., Aminopyrazine Inhibitors Binding to an Unusual Inactive Conformation of the Mitotic Kinase Nek2: Sar and Structural Characterization. J.Med.Chem. (2010)

Release Date

2010-10-27

Peptides

SERINE/THREONINE-PROTEIN KINASE NEK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERINE/THREONINE-PROTEIN KINASE NEK2

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