SMTL ID : 2xkl.1

Crystal Structure of Mouse Apolipoprotein M

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: W.81, Y.83, E.119, R.126 Ligands: POL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.83, A:R.126 Water bridges: A:T.43 GOL.5: 5 residues within 4Å: Chain B: W.81, Y.83, E.119, R.126 Ligands: POL.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.126

2 x POL: N-PROPANOL(Non-covalent)

POL.2: 8 residues within 4Å: Chain A: F.30, F.44, L.65, W.81, Y.83, L.128, Y.130 Ligands: GOL.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.30, A:F.44, A:F.44, A:W.81 Hydrogen bonds: A:Y.130 POL.6: 8 residues within 4Å: Chain B: F.30, F.44, L.65, W.81, Y.83, L.128, Y.130 Ligands: GOL.5 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.30, B:F.44, B:F.44, B:W.81 Hydrogen bonds: B:Y.130, B:Y.130

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: Q.145, T.148, S.149, F.153, K.154, F.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.148, A:F.153 EDO.7: 6 residues within 4Å: Chain B: Q.145, T.148, S.149, F.153, K.154, F.156 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.153

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Chain A: C.150 No protein-ligand interaction detected (PLIP) NA.8: 1 residues within 4Å: Chain B: C.150 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sevvana, M. et al., Mouse Apom Displays an Unprecedented Seven-Stranded Lipocalin Fold: Folding Decoy or Alternative Native Fold?. J.Mol.Biol. (2010)

Release Date

2010-10-13

Peptides

APOLIPOPROTEIN M: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

APOLIPOPROTEIN M