SMTL ID : 2xlq.2 (1 other biounit)

Structural and Mechanistic Analysis of the Magnesium-Independent Aromatic Prenyltransferase CloQ from the Clorobiocin Biosynthetic Pathway

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-tetramer

Ligands

12 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: S.60, D.279, Y.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.60 FMT.2: 4 residues within 4Å: Chain A: F.13, D.14, C.15, R.46 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.14, A:C.15, A:R.46 Water bridges: A:E.16 FMT.3: 7 residues within 4Å: Chain A: A.34, H.35, R.36, L.37 Chain B: R.23 Chain D: G.30, A.31 7 PLIP interactions: 2 interactions with chain D, 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: D:A.31, A:H.35, A:R.36, A:L.37, B:R.23 Water bridges: D:G.30, A:H.35 FMT.5: 3 residues within 4Å: Chain B: S.60, D.279, Y.280 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.60 FMT.6: 4 residues within 4Å: Chain B: F.13, D.14, C.15, R.46 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.14, B:C.15, B:R.46 Water bridges: B:E.16 FMT.7: 7 residues within 4Å: Chain A: R.23 Chain B: A.34, H.35, R.36, L.37 Chain C: G.30, A.31 7 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: B:H.35, B:R.36, B:L.37, A:R.23, C:A.31 Water bridges: B:H.35, C:G.30 FMT.9: 3 residues within 4Å: Chain C: S.60, D.279, Y.280 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.60 FMT.10: 4 residues within 4Å: Chain C: F.13, D.14, C.15, R.46 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.14, C:D.14, C:C.15, C:R.46 Water bridges: C:E.16 FMT.11: 7 residues within 4Å: Chain B: G.30, A.31 Chain C: A.34, H.35, R.36, L.37 Chain D: R.23 7 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D, 2 interactions with chain B Hydrogen bonds: C:H.35, C:R.36, C:L.37, D:R.23, B:A.31 Water bridges: D:R.23, B:G.30 FMT.13: 3 residues within 4Å: Chain D: S.60, D.279, Y.280 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.60 FMT.14: 4 residues within 4Å: Chain D: F.13, D.14, C.15, R.46 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:D.14, D:D.14, D:C.15, D:R.46 Water bridges: D:E.16 FMT.15: 7 residues within 4Å: Chain A: G.30, A.31 Chain C: R.23 Chain D: A.34, H.35, R.36, L.37 7 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: D:H.35, D:R.36, D:L.37, A:A.31, C:R.23 Water bridges: A:G.30, C:R.23

4 x 34H: (2R)-2-HYDROXY-3-(4-HYDROXYPHENYL)PROPANOIC ACID(Covalent)

34H.4: 12 residues within 4Å: Chain A: F.71, W.125, R.163, F.164, Y.177, C.218, Y.236, L.238, E.284, M.291, L.295, C.300 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.177, A:L.238 Hydrogen bonds: A:E.284 Water bridges: A:R.179 Salt bridges: A:R.163, A:R.179 pi-Stacking: A:W.125, A:Y.236 34H.8: 12 residues within 4Å: Chain B: F.71, W.125, R.163, F.164, Y.177, C.218, Y.236, L.238, E.284, M.291, L.295, C.300 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.177, B:L.238 Hydrogen bonds: B:E.284 Water bridges: B:R.179 Salt bridges: B:R.163, B:R.179 pi-Stacking: B:W.125, B:Y.236 34H.12: 12 residues within 4Å: Chain C: F.71, W.125, R.163, F.164, Y.177, C.218, Y.236, L.238, E.284, M.291, L.295, C.300 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:Y.177, C:L.238 Hydrogen bonds: C:E.284 Water bridges: C:R.179 Salt bridges: C:R.163, C:R.179 pi-Stacking: C:W.125, C:Y.236 34H.16: 12 residues within 4Å: Chain D: F.71, W.125, R.163, F.164, Y.177, C.218, Y.236, L.238, E.284, M.291, L.295, C.300 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:Y.177, D:L.238 Hydrogen bonds: D:E.284 Water bridges: D:R.179 Salt bridges: D:R.163, D:R.179 pi-Stacking: D:W.125, D:Y.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Metzger, U. et al., Structure and Mechanism of the Magnesium-Independent Aromatic Prenyltransferase Cloq from the Clorobiocin Biosynthetic Pathway. J.Mol.Biol. (2010)

Release Date

2010-10-27

Peptides

CLOQ: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

CLOQ

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