SMTL ID : 2xm3.3 (2 other biounits)

Deinococcus radiodurans ISDra2 Transposase Left end DNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x DT- DT- DG- DA- DT: 5'-D(*TP*TP*AP*GP*T)-3'(Non-covalent)

DT-DT-DG-DA-DT.1: 19 residues within 4Å: Chain A: C.27, Y.30, R.31, H.32, H.67, K.105, L.106, W.107, G.108 Chain B: Y.132, I.133 Chain C: G.2, C.3, A.4, C.5, A.6, C.7, T.8 Ligands: GOL.6 Protein-ligand interaction information (PLIP) not available DT-DT-DG-DA-DT.2: 15 residues within 4Å: Chain A: Y.132, I.133 Chain B: C.27, Y.30, R.31, H.32, H.67, K.105, L.106, W.107 Chain D: C.3, A.4, C.5, A.6, C.7 Protein-ligand interaction information (PLIP) not available

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.3: 2 residues within 4Å: Chain A: P.114 Chain C: C.21 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:P.114, H2O.2, H2O.4, H2O.4, H2O.4 MG.4: 2 residues within 4Å: Chain B: P.114 Chain D: C.21 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:P.114, H2O.3, H2O.5, H2O.5, H2O.5 MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: C.27, C.117 Chain B: Y.132 Chain C: C.5, A.6 Ligands: DT-DT-DG-DA-DT.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hickman, A.B. et al., DNA Recognition and the Precleavage State During Single-Stranded DNA Transposition in D. Radiodurans. Embo J. (2010)

Release Date

2010-10-13

Peptides

TRANSPOSASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

TRANSPOSASE

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