SMTL ID : 2xmb.1

G117H mutant of human butyrylcholinesterase in complex with sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 9 residues within 4Å: Chain A: P.335, G.336, F.337, S.338, D.340, N.341, N.342 Ligands: UNX.18, UNX.19 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.340 Hydrogen bonds: A:G.336 NAG-NAG-FUL.3: 8 residues within 4Å: Chain A: Y.237, N.241, N.245, K.248, L.249, F.278, P.281 Ligands: UNX.16 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.249

1 x NAG- FUL: beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUL.2: 4 residues within 4Å: Chain A: N.106, N.188, K.190, S.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.188, A:N.188, A:K.190 Water bridges: A:T.108, A:R.219, A:R.219 Hydrophobic interactions: A:N.106

23 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 5 residues within 4Å: Chain A: G.116, T.120 Ligands: UNX.5, UNX.6, UNX.7 Ligand excluded by PLIP UNX.5: 5 residues within 4Å: Chain A: G.116 Ligands: UNX.4, UNX.6, UNX.21, SO4.35 Ligand excluded by PLIP UNX.6: 6 residues within 4Å: Chain A: G.116, H.117 Ligands: UNX.4, UNX.5, UNX.7, SO4.35 Ligand excluded by PLIP UNX.7: 6 residues within 4Å: Chain A: G.116, H.117, Q.119 Ligands: UNX.4, UNX.6, UNX.8 Ligand excluded by PLIP UNX.8: 3 residues within 4Å: Chain A: Q.119, T.120 Ligands: UNX.7 Ligand excluded by PLIP UNX.9: 7 residues within 4Å: Chain A: R.242, S.287, V.288 Ligands: UNX.10, UNX.11, UNX.20, UNX.25 Ligand excluded by PLIP UNX.10: 8 residues within 4Å: Chain A: W.231, T.234, R.242, V.288 Ligands: UNX.9, UNX.11, UNX.12, UNX.20 Ligand excluded by PLIP UNX.11: 6 residues within 4Å: Chain A: E.238, R.242 Ligands: UNX.9, UNX.10, UNX.12, UNX.20 Ligand excluded by PLIP UNX.12: 6 residues within 4Å: Chain A: P.230, V.233, T.234, E.238 Ligands: UNX.10, UNX.11 Ligand excluded by PLIP UNX.13: 3 residues within 4Å: Chain A: P.281, Y.282 Ligands: UNX.14 Ligand excluded by PLIP UNX.14: 5 residues within 4Å: Chain A: V.280, P.281, Y.282 Ligands: UNX.13, UNX.15 Ligand excluded by PLIP UNX.15: 6 residues within 4Å: Chain A: R.242, V.280, P.281 Ligands: UNX.14, UNX.16, UNX.17 Ligand excluded by PLIP UNX.16: 4 residues within 4Å: Chain A: P.281 Ligands: NAG-NAG-FUL.3, UNX.15, UNX.17 Ligand excluded by PLIP UNX.17: 4 residues within 4Å: Chain A: E.238, R.242 Ligands: UNX.15, UNX.16 Ligand excluded by PLIP UNX.18: 5 residues within 4Å: Chain A: N.341, N.342 Ligands: NAG-NAG-FUL.1, UNX.19, UNX.26 Ligand excluded by PLIP UNX.19: 4 residues within 4Å: Chain A: N.341 Ligands: NAG-NAG-FUL.1, UNX.18, UNX.26 Ligand excluded by PLIP UNX.20: 7 residues within 4Å: Chain A: W.231, S.287, V.288 Ligands: UNX.9, UNX.10, UNX.11, UNX.25 Ligand excluded by PLIP UNX.21: 5 residues within 4Å: Chain A: W.82 Ligands: UNX.5, UNX.22, UNX.23, UNX.24 Ligand excluded by PLIP UNX.22: 6 residues within 4Å: Chain A: G.115, G.116 Ligands: UNX.21, UNX.23, UNX.24, SO4.35 Ligand excluded by PLIP UNX.23: 5 residues within 4Å: Chain A: E.197 Ligands: UNX.21, UNX.22, UNX.24, SO4.35 Ligand excluded by PLIP UNX.24: 5 residues within 4Å: Chain A: W.82 Ligands: UNX.21, UNX.22, UNX.23, SO4.35 Ligand excluded by PLIP UNX.25: 3 residues within 4Å: Chain A: S.287 Ligands: UNX.9, UNX.20 Ligand excluded by PLIP UNX.26: 4 residues within 4Å: Chain A: N.341, N.342 Ligands: UNX.18, UNX.19 Ligand excluded by PLIP

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.27: 2 residues within 4Å: Chain A: T.488, T.508 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain A: R.347, Q.351 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain A: T.512, K.513 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain A: Y.420, R.515 Ligand excluded by PLIP CL.32: 1 residues within 4Å: Chain A: R.515 Ligand excluded by PLIP CL.39: 1 residues within 4Å: Chain A: L.236 Ligand excluded by PLIP CL.40: 1 residues within 4Å: Chain A: N.85 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.30: 1 residues within 4Å: Chain A: F.525 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.33: 5 residues within 4Å: Chain A: L.18, Y.61, W.98, D.129, K.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.98, A:K.131, A:K.131 Water bridges: A:D.129

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.34: 4 residues within 4Å: Chain A: Q.316, G.413, N.414, N.415 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.316, A:N.414, A:N.415 SO4.35: 11 residues within 4Å: Chain A: G.115, G.116, H.117, S.198, A.199, H.438 Ligands: UNX.5, UNX.6, UNX.22, UNX.23, UNX.24 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.116, A:H.117, A:S.198, A:A.199 Water bridges: A:H.117 Salt bridges: A:H.117, A:H.438

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.36: 2 residues within 4Å: Chain A: R.14, N.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.14 NAG.37: 4 residues within 4Å: Chain A: R.465, K.469, E.482, N.485 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.469, A:E.482 Hydrogen bonds: A:R.465, A:N.485 Water bridges: A:R.465 NAG.38: 2 residues within 4Å: Chain A: N.256, T.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nachon, F. et al., X-Ray Crystallographic Snapshots of Reaction Intermediates in the G117H Mutant of Human Butyrylcholinesterase, a Nerve Agent Target Engineered Into a Catalytic Bioscavenge. Biochem.J. (2011)

Release Date

2010-12-01

Peptides

CHOLINESTERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CHOLINESTERASE

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