- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.58 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GLA: alpha-D-galactopyranose(Non-covalent)
- 4 x IMD: IMIDAZOLE(Non-covalent)
IMD.2: 9 residues within 4Å:- Chain A: H.203, R.447, N.484, G.532, D.552
- Chain C: G.58, F.59
- Ligands: GLA.1, GOL.65
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain A- Water bridges: C:F.59
- Hydrogen bonds: A:N.484
IMD.29: 9 residues within 4Å:- Chain B: H.203, R.447, N.484, G.532, D.552
- Chain D: G.58, F.59
- Ligands: GLA.28, GOL.92
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:N.484
- Water bridges: D:F.59
IMD.56: 9 residues within 4Å:- Chain A: G.58, F.59
- Chain C: H.203, R.447, N.484, G.532, D.552
- Ligands: GOL.11, GLA.55
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Water bridges: A:F.59
- Hydrogen bonds: C:N.484
IMD.83: 9 residues within 4Å:- Chain B: G.58, F.59
- Chain D: H.203, R.447, N.484, G.532, D.552
- Ligands: GOL.38, GLA.82
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:N.484
- Water bridges: B:F.59
- 100 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 10 residues within 4Å:- Chain A: Y.282, S.488, I.490, Y.504
- Chain C: A.83, G.84, E.85, M.86, D.87, F.88
Ligand excluded by PLIPGOL.4: 8 residues within 4Å:- Chain A: H.36, L.37, Y.38, F.39, Y.189, V.190, K.192
- Chain B: K.681
Ligand excluded by PLIPGOL.5: 9 residues within 4Å:- Chain A: V.668, V.669, N.670, D.714, P.715, E.717, K.722, A.723, K.724
Ligand excluded by PLIPGOL.6: 9 residues within 4Å:- Chain A: G.385, D.386, K.388, N.426, L.427, E.430, H.431, N.462, Q.466
Ligand excluded by PLIPGOL.7: 7 residues within 4Å:- Chain A: K.457, R.460, D.461, F.464, D.513, L.514, K.517
Ligand excluded by PLIPGOL.8: 7 residues within 4Å:- Chain A: K.7, D.9, N.12, V.14, H.16, N.45, Y.46
Ligand excluded by PLIPGOL.9: 8 residues within 4Å:- Chain A: K.121, G.122, L.123, W.286, E.293, F.294, Q.295, L.509
Ligand excluded by PLIPGOL.10: 5 residues within 4Å:- Chain A: R.441, K.442
- Chain C: P.64, F.105, V.145
Ligand excluded by PLIPGOL.11: 9 residues within 4Å:- Chain A: D.56, R.57, G.58
- Chain B: A.675, Q.676
- Chain C: H.203, A.204, Q.586
- Ligands: IMD.56
Ligand excluded by PLIPGOL.12: 8 residues within 4Å:- Chain A: A.497, D.498
- Chain C: R.96, N.97, P.98, G.100, Y.178, K.285
Ligand excluded by PLIPGOL.13: 8 residues within 4Å:- Chain A: I.197, V.209, R.211, T.243, N.244, E.245, L.308, Y.564
Ligand excluded by PLIPGOL.14: 5 residues within 4Å:- Chain A: S.659, N.660, K.661, D.688, K.691
Ligand excluded by PLIPGOL.15: 6 residues within 4Å:- Chain A: N.695, F.702, F.712, Y.726, F.728
- Chain B: Q.49
Ligand excluded by PLIPGOL.16: 4 residues within 4Å:- Chain A: L.495, P.496, Q.499, R.506
Ligand excluded by PLIPGOL.17: 3 residues within 4Å:- Chain A: W.340, Y.344, F.345
Ligand excluded by PLIPGOL.18: 5 residues within 4Å:- Chain A: G.455, R.460, R.506, L.509, G.510
Ligand excluded by PLIPGOL.19: 6 residues within 4Å:- Chain A: K.645, S.649, Q.651, T.680, K.681
- Chain B: D.191
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain A: P.98, S.146, K.147, G.173, E.174, E.175
Ligand excluded by PLIPGOL.21: 6 residues within 4Å:- Chain A: I.332, R.333, P.334, E.365, K.411, R.633
Ligand excluded by PLIPGOL.22: 6 residues within 4Å:- Chain A: D.191, K.192, D.193, R.267, G.271
- Chain B: Y.678
Ligand excluded by PLIPGOL.23: 7 residues within 4Å:- Chain A: L.398, G.399, I.470, S.473, K.475, I.476
- Ligands: GOL.24
Ligand excluded by PLIPGOL.24: 4 residues within 4Å:- Chain A: K.469, D.472, S.473
- Ligands: GOL.23
Ligand excluded by PLIPGOL.25: 4 residues within 4Å:- Chain A: F.464, E.465, V.468, R.521
Ligand excluded by PLIPGOL.26: 5 residues within 4Å:- Chain A: N.662, K.691, A.730, I.731, N.732
Ligand excluded by PLIPGOL.27: 11 residues within 4Å:- Chain A: G.32, T.33, L.34, R.73, K.78, Y.80, S.81, E.85, L.106, A.107, L.141
Ligand excluded by PLIPGOL.30: 10 residues within 4Å:- Chain B: Y.282, S.488, I.490, Y.504
- Chain D: A.83, G.84, E.85, M.86, D.87, F.88
Ligand excluded by PLIPGOL.31: 8 residues within 4Å:- Chain A: K.681
- Chain B: H.36, L.37, Y.38, F.39, Y.189, V.190, K.192
Ligand excluded by PLIPGOL.32: 9 residues within 4Å:- Chain B: V.668, V.669, N.670, D.714, P.715, E.717, K.722, A.723, K.724
Ligand excluded by PLIPGOL.33: 9 residues within 4Å:- Chain B: G.385, D.386, K.388, N.426, L.427, E.430, H.431, N.462, Q.466
Ligand excluded by PLIPGOL.34: 7 residues within 4Å:- Chain B: K.457, R.460, D.461, F.464, D.513, L.514, K.517
Ligand excluded by PLIPGOL.35: 7 residues within 4Å:- Chain B: K.7, D.9, N.12, V.14, H.16, N.45, Y.46
Ligand excluded by PLIPGOL.36: 8 residues within 4Å:- Chain B: K.121, G.122, L.123, W.286, E.293, F.294, Q.295, L.509
Ligand excluded by PLIPGOL.37: 5 residues within 4Å:- Chain B: R.441, K.442
- Chain D: P.64, F.105, V.145
Ligand excluded by PLIPGOL.38: 9 residues within 4Å:- Chain A: A.675, Q.676
- Chain B: D.56, R.57, G.58
- Chain D: H.203, A.204, Q.586
- Ligands: IMD.83
Ligand excluded by PLIPGOL.39: 8 residues within 4Å:- Chain B: A.497, D.498
- Chain D: R.96, N.97, P.98, G.100, Y.178, K.285
Ligand excluded by PLIPGOL.40: 8 residues within 4Å:- Chain B: I.197, V.209, R.211, T.243, N.244, E.245, L.308, Y.564
Ligand excluded by PLIPGOL.41: 5 residues within 4Å:- Chain B: S.659, N.660, K.661, D.688, K.691
Ligand excluded by PLIPGOL.42: 6 residues within 4Å:- Chain A: Q.49
- Chain B: N.695, F.702, F.712, Y.726, F.728
Ligand excluded by PLIPGOL.43: 4 residues within 4Å:- Chain B: L.495, P.496, Q.499, R.506
Ligand excluded by PLIPGOL.44: 3 residues within 4Å:- Chain B: W.340, Y.344, F.345
Ligand excluded by PLIPGOL.45: 5 residues within 4Å:- Chain B: G.455, R.460, R.506, L.509, G.510
Ligand excluded by PLIPGOL.46: 6 residues within 4Å:- Chain A: D.191
- Chain B: K.645, S.649, Q.651, T.680, K.681
Ligand excluded by PLIPGOL.47: 6 residues within 4Å:- Chain B: P.98, S.146, K.147, G.173, E.174, E.175
Ligand excluded by PLIPGOL.48: 6 residues within 4Å:- Chain B: I.332, R.333, P.334, E.365, K.411, R.633
Ligand excluded by PLIPGOL.49: 6 residues within 4Å:- Chain A: Y.678
- Chain B: D.191, K.192, D.193, R.267, G.271
Ligand excluded by PLIPGOL.50: 7 residues within 4Å:- Chain B: L.398, G.399, I.470, S.473, K.475, I.476
- Ligands: GOL.51
Ligand excluded by PLIPGOL.51: 4 residues within 4Å:- Chain B: K.469, D.472, S.473
- Ligands: GOL.50
Ligand excluded by PLIPGOL.52: 4 residues within 4Å:- Chain B: F.464, E.465, V.468, R.521
Ligand excluded by PLIPGOL.53: 5 residues within 4Å:- Chain B: N.662, K.691, A.730, I.731, N.732
Ligand excluded by PLIPGOL.54: 11 residues within 4Å:- Chain B: G.32, T.33, L.34, R.73, K.78, Y.80, S.81, E.85, L.106, A.107, L.141
Ligand excluded by PLIPGOL.57: 10 residues within 4Å:- Chain A: A.83, G.84, E.85, M.86, D.87, F.88
- Chain C: Y.282, S.488, I.490, Y.504
Ligand excluded by PLIPGOL.58: 8 residues within 4Å:- Chain C: H.36, L.37, Y.38, F.39, Y.189, V.190, K.192
- Chain D: K.681
Ligand excluded by PLIPGOL.59: 9 residues within 4Å:- Chain C: V.668, V.669, N.670, D.714, P.715, E.717, K.722, A.723, K.724
Ligand excluded by PLIPGOL.60: 9 residues within 4Å:- Chain C: G.385, D.386, K.388, N.426, L.427, E.430, H.431, N.462, Q.466
Ligand excluded by PLIPGOL.61: 7 residues within 4Å:- Chain C: K.457, R.460, D.461, F.464, D.513, L.514, K.517
Ligand excluded by PLIPGOL.62: 7 residues within 4Å:- Chain C: K.7, D.9, N.12, V.14, H.16, N.45, Y.46
Ligand excluded by PLIPGOL.63: 8 residues within 4Å:- Chain C: K.121, G.122, L.123, W.286, E.293, F.294, Q.295, L.509
Ligand excluded by PLIPGOL.64: 5 residues within 4Å:- Chain A: P.64, F.105, V.145
- Chain C: R.441, K.442
Ligand excluded by PLIPGOL.65: 9 residues within 4Å:- Chain A: H.203, A.204, Q.586
- Chain C: D.56, R.57, G.58
- Chain D: A.675, Q.676
- Ligands: IMD.2
Ligand excluded by PLIPGOL.66: 8 residues within 4Å:- Chain A: R.96, N.97, P.98, G.100, Y.178, K.285
- Chain C: A.497, D.498
Ligand excluded by PLIPGOL.67: 8 residues within 4Å:- Chain C: I.197, V.209, R.211, T.243, N.244, E.245, L.308, Y.564
Ligand excluded by PLIPGOL.68: 5 residues within 4Å:- Chain C: S.659, N.660, K.661, D.688, K.691
Ligand excluded by PLIPGOL.69: 6 residues within 4Å:- Chain C: N.695, F.702, F.712, Y.726, F.728
- Chain D: Q.49
Ligand excluded by PLIPGOL.70: 4 residues within 4Å:- Chain C: L.495, P.496, Q.499, R.506
Ligand excluded by PLIPGOL.71: 3 residues within 4Å:- Chain C: W.340, Y.344, F.345
Ligand excluded by PLIPGOL.72: 5 residues within 4Å:- Chain C: G.455, R.460, R.506, L.509, G.510
Ligand excluded by PLIPGOL.73: 6 residues within 4Å:- Chain C: K.645, S.649, Q.651, T.680, K.681
- Chain D: D.191
Ligand excluded by PLIPGOL.74: 6 residues within 4Å:- Chain C: P.98, S.146, K.147, G.173, E.174, E.175
Ligand excluded by PLIPGOL.75: 6 residues within 4Å:- Chain C: I.332, R.333, P.334, E.365, K.411, R.633
Ligand excluded by PLIPGOL.76: 6 residues within 4Å:- Chain C: D.191, K.192, D.193, R.267, G.271
- Chain D: Y.678
Ligand excluded by PLIPGOL.77: 7 residues within 4Å:- Chain C: L.398, G.399, I.470, S.473, K.475, I.476
- Ligands: GOL.78
Ligand excluded by PLIPGOL.78: 4 residues within 4Å:- Chain C: K.469, D.472, S.473
- Ligands: GOL.77
Ligand excluded by PLIPGOL.79: 4 residues within 4Å:- Chain C: F.464, E.465, V.468, R.521
Ligand excluded by PLIPGOL.80: 5 residues within 4Å:- Chain C: N.662, K.691, A.730, I.731, N.732
Ligand excluded by PLIPGOL.81: 11 residues within 4Å:- Chain C: G.32, T.33, L.34, R.73, K.78, Y.80, S.81, E.85, L.106, A.107, L.141
Ligand excluded by PLIPGOL.84: 10 residues within 4Å:- Chain B: A.83, G.84, E.85, M.86, D.87, F.88
- Chain D: Y.282, S.488, I.490, Y.504
Ligand excluded by PLIPGOL.85: 8 residues within 4Å:- Chain C: K.681
- Chain D: H.36, L.37, Y.38, F.39, Y.189, V.190, K.192
Ligand excluded by PLIPGOL.86: 9 residues within 4Å:- Chain D: V.668, V.669, N.670, D.714, P.715, E.717, K.722, A.723, K.724
Ligand excluded by PLIPGOL.87: 9 residues within 4Å:- Chain D: G.385, D.386, K.388, N.426, L.427, E.430, H.431, N.462, Q.466
Ligand excluded by PLIPGOL.88: 7 residues within 4Å:- Chain D: K.457, R.460, D.461, F.464, D.513, L.514, K.517
Ligand excluded by PLIPGOL.89: 7 residues within 4Å:- Chain D: K.7, D.9, N.12, V.14, H.16, N.45, Y.46
Ligand excluded by PLIPGOL.90: 8 residues within 4Å:- Chain D: K.121, G.122, L.123, W.286, E.293, F.294, Q.295, L.509
Ligand excluded by PLIPGOL.91: 5 residues within 4Å:- Chain B: P.64, F.105, V.145
- Chain D: R.441, K.442
Ligand excluded by PLIPGOL.92: 9 residues within 4Å:- Chain B: H.203, A.204, Q.586
- Chain C: A.675, Q.676
- Chain D: D.56, R.57, G.58
- Ligands: IMD.29
Ligand excluded by PLIPGOL.93: 8 residues within 4Å:- Chain B: R.96, N.97, P.98, G.100, Y.178, K.285
- Chain D: A.497, D.498
Ligand excluded by PLIPGOL.94: 8 residues within 4Å:- Chain D: I.197, V.209, R.211, T.243, N.244, E.245, L.308, Y.564
Ligand excluded by PLIPGOL.95: 5 residues within 4Å:- Chain D: S.659, N.660, K.661, D.688, K.691
Ligand excluded by PLIPGOL.96: 6 residues within 4Å:- Chain C: Q.49
- Chain D: N.695, F.702, F.712, Y.726, F.728
Ligand excluded by PLIPGOL.97: 4 residues within 4Å:- Chain D: L.495, P.496, Q.499, R.506
Ligand excluded by PLIPGOL.98: 3 residues within 4Å:- Chain D: W.340, Y.344, F.345
Ligand excluded by PLIPGOL.99: 5 residues within 4Å:- Chain D: G.455, R.460, R.506, L.509, G.510
Ligand excluded by PLIPGOL.100: 6 residues within 4Å:- Chain C: D.191
- Chain D: K.645, S.649, Q.651, T.680, K.681
Ligand excluded by PLIPGOL.101: 6 residues within 4Å:- Chain D: P.98, S.146, K.147, G.173, E.174, E.175
Ligand excluded by PLIPGOL.102: 6 residues within 4Å:- Chain D: I.332, R.333, P.334, E.365, K.411, R.633
Ligand excluded by PLIPGOL.103: 6 residues within 4Å:- Chain C: Y.678
- Chain D: D.191, K.192, D.193, R.267, G.271
Ligand excluded by PLIPGOL.104: 7 residues within 4Å:- Chain D: L.398, G.399, I.470, S.473, K.475, I.476
- Ligands: GOL.105
Ligand excluded by PLIPGOL.105: 4 residues within 4Å:- Chain D: K.469, D.472, S.473
- Ligands: GOL.104
Ligand excluded by PLIPGOL.106: 4 residues within 4Å:- Chain D: F.464, E.465, V.468, R.521
Ligand excluded by PLIPGOL.107: 5 residues within 4Å:- Chain D: N.662, K.691, A.730, I.731, N.732
Ligand excluded by PLIPGOL.108: 11 residues within 4Å:- Chain D: G.32, T.33, L.34, R.73, K.78, Y.80, S.81, E.85, L.106, A.107, L.141
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fredslund, F. et al., Crystal Structure of Alpha-Galactosidase from Lactobacillus Acidophilus Ncfm: Insight Into Tetramer Formation and Substrate Binding. J.Mol.Biol. (2011)
- Release Date
- 2011-08-10
- Peptides
- ALPHA-GALACTOSIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.58 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GLA: alpha-D-galactopyranose(Non-covalent)
- 4 x IMD: IMIDAZOLE(Non-covalent)
- 100 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fredslund, F. et al., Crystal Structure of Alpha-Galactosidase from Lactobacillus Acidophilus Ncfm: Insight Into Tetramer Formation and Substrate Binding. J.Mol.Biol. (2011)
- Release Date
- 2011-08-10
- Peptides
- ALPHA-GALACTOSIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A