SMTL ID : 2xov.1

Crystal Structure of E.coli rhomboid protease GlpG, native enzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

19 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)(Non-functional Binders)

BNG.1: 3 residues within 4Å: Chain A: I.12, A.13 Ligands: BNG.15 Ligand excluded by PLIP BNG.2: 11 residues within 4Å: Chain A: E.1, R.2, A.3, L.66, W.67, W.69, Y.70, G.73, A.74 Ligands: BNG.3, BNG.9 Ligand excluded by PLIP BNG.3: 4 residues within 4Å: Chain A: F.63, Y.70, Q.136 Ligands: BNG.2 Ligand excluded by PLIP BNG.4: 2 residues within 4Å: Chain A: V.177, L.180 Ligand excluded by PLIP BNG.5: 6 residues within 4Å: Chain A: M.10, F.49, T.50, A.92 Ligands: BNG.6, BNG.15 Ligand excluded by PLIP BNG.6: 5 residues within 4Å: Chain A: V.9, M.10, A.13 Ligands: BNG.5, BNG.15 Ligand excluded by PLIP BNG.7: 3 residues within 4Å: Chain A: I.147, W.151 Ligands: BNG.16 Ligand excluded by PLIP BNG.8: 3 residues within 4Å: Chain A: L.31, W.32, R.47 Ligand excluded by PLIP BNG.9: 5 residues within 4Å: Chain A: F.63, F.142, I.145, F.155 Ligands: BNG.2 Ligand excluded by PLIP BNG.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP BNG.11: 4 residues within 4Å: Chain A: V.16, A.20, L.24, W.32 Ligand excluded by PLIP BNG.12: 3 residues within 4Å: Chain A: F.43, F.45 Ligands: BNG.14 Ligand excluded by PLIP BNG.13: 6 residues within 4Å: Chain A: M.118, G.119, W.122, E.126, I.140, L.144 Ligand excluded by PLIP BNG.14: 3 residues within 4Å: Chain A: F.43, F.45 Ligands: BNG.12 Ligand excluded by PLIP BNG.15: 9 residues within 4Å: Chain A: A.13, V.17, W.32, L.33, W.46, L.53 Ligands: BNG.1, BNG.5, BNG.6 Ligand excluded by PLIP BNG.16: 5 residues within 4Å: Chain A: I.147, V.148, W.151, F.152 Ligands: BNG.7 Ligand excluded by PLIP BNG.17: 1 residues within 4Å: Chain A: R.137 Ligand excluded by PLIP BNG.18: 6 residues within 4Å: Chain A: F.102, W.151, A.160, N.161, G.162, A.163 Ligand excluded by PLIP BNG.19: 3 residues within 4Å: Chain A: P.39, T.40, K.42 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.20: 9 residues within 4Å: Chain A: G.150, D.153, F.155, G.156, M.157, S.158, M.159, N.161, H.164 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.150, A:D.153, A:M.157, A:S.158, A:H.164 Water bridges: A:S.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinothkumar, K.R. et al., The structural basis for catalysis and substrate specificity of a rhomboid protease. EMBO J. (2010)

Release Date

2010-10-13

Peptides

RHOMBOID PROTEASE GLPG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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RHOMBOID PROTEASE GLPG

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