SMTL ID : 2xq1.3 (3 other biounits)

Crystal structure of peroxisomal catalase from the yeast Hansenula polymorpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: R.64, V.65, V.66, H.67, R.104, S.106, G.123, F.124, V.138, Y.139, N.140, P.150, F.153, S.208, H.210, L.291, F.326, V.342, S.345, R.346, S.349, Y.350, T.353, H.354, R.357 Chain D: D.57 26 PLIP interactions: 26 interactions with chain A, Hydrophobic interactions: A:V.65, A:V.66, A:H.67, A:V.138, A:F.153, A:F.153, A:F.153, A:F.153, A:F.153, A:L.291, A:F.326, A:R.346, A:Y.350, A:Y.350, A:T.353 Hydrogen bonds: A:S.106 Salt bridges: A:R.64, A:R.64, A:R.104, A:H.354, A:R.357 pi-Stacking: A:H.67, A:F.145, A:F.153 pi-Cation interactions: A:R.346 Metal complexes: A:Y.350 HEM.2: 27 residues within 4Å: Chain B: R.64, V.65, V.66, H.67, R.104, G.123, F.124, A.125, V.138, Y.139, N.140, P.150, F.153, S.208, H.210, L.291, F.326, V.342, S.345, R.346, S.349, Y.350, T.353, H.354, R.357 Chain C: L.53, D.57 28 PLIP interactions: 27 interactions with chain B, 1 interactions with chain C, Hydrophobic interactions: B:V.65, B:V.66, B:H.67, B:A.125, B:V.138, B:N.140, B:F.153, B:F.153, B:F.153, B:F.153, B:F.153, B:L.291, B:F.326, B:V.342, B:R.346, B:Y.350, C:L.53 Hydrogen bonds: B:T.353 Salt bridges: B:R.64, B:R.64, B:R.104, B:H.354, B:R.357 pi-Stacking: B:H.67, B:F.145, B:F.153 pi-Cation interactions: B:R.346 Metal complexes: B:Y.350 HEM.3: 28 residues within 4Å: Chain B: L.53, D.57 Chain C: R.64, V.65, V.66, H.67, R.104, S.106, G.123, F.124, A.125, V.138, Y.139, N.140, F.145, P.150, F.153, H.210, L.291, F.326, V.342, S.345, R.346, S.349, Y.350, T.353, H.354, R.357 29 PLIP interactions: 28 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:V.65, C:H.67, C:A.125, C:V.138, C:N.140, C:F.145, C:F.153, C:F.153, C:F.153, C:F.153, C:L.291, C:F.326, C:V.342, C:R.346, C:Y.350, C:Y.350, C:Y.350, B:L.53 Hydrogen bonds: C:S.106, C:T.353 Salt bridges: C:R.64, C:R.64, C:R.104, C:H.354, C:R.357 pi-Stacking: C:H.67, C:F.153 pi-Cation interactions: C:R.346 Metal complexes: C:Y.350 HEM.4: 28 residues within 4Å: Chain A: D.57 Chain D: R.64, V.65, V.66, H.67, R.104, S.106, G.123, F.124, A.125, V.138, Y.139, N.140, F.145, P.150, F.153, S.208, H.210, L.291, F.326, V.342, S.345, R.346, S.349, Y.350, T.353, H.354, R.357 28 PLIP interactions: 28 interactions with chain D, Hydrophobic interactions: D:V.65, D:V.66, D:H.67, D:A.125, D:V.138, D:N.140, D:F.145, D:F.153, D:F.153, D:F.153, D:F.153, D:F.153, D:L.291, D:F.326, D:V.342, D:R.346, D:Y.350, D:Y.350 Hydrogen bonds: D:S.106 Salt bridges: D:R.64, D:R.64, D:R.104, D:H.354, D:R.357 pi-Stacking: D:H.67, D:F.153 pi-Cation interactions: D:R.346 Metal complexes: D:Y.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Penya-Soler, E. et al., Structural Features of Peroxisomal Catalase from the Yeast Hansenula Polymorpha. Acta Crystallogr.,Sect.D (2011)

Release Date

2011-06-22

Peptides

PEROXISOMAL CATALASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

PEROXISOMAL CATALASE

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