SMTL ID : 2xqq.2 (2 other biounits)

Human dynein light chain (DYNLL2) in complex with an in vitro evolved peptide (Ac-SRGTQTE).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

homo-dimer

Ligands

2 x SAC- ARG- GLY- THR- GLN- THR- GLU: SAC-ARG-GLY-THR-GLN-THR-GLU(Non-covalent)

SAC-ARG-GLY-THR-GLN-THR-GLU.1: 20 residues within 4Å: Chain A: N.10, A.11, D.12, R.60, N.61, F.62, G.63, S.64, Y.65, V.66, T.67, H.68, F.73, Y.75, Y.77, A.82 Chain B: I.34, E.35, K.36, K.43 28 PLIP interactions: 22 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:F.62, A:F.73, A:Y.75, A:A.82, B:K.36 Hydrogen bonds: A:A.11, A:N.61, A:F.62, A:F.62, A:S.64, A:S.64, A:V.66, A:V.66, A:Y.75, A:Y.77, A:Y.77, B:E.35, B:E.35, B:K.36, B:K.43, B:K.43 Water bridges: A:N.10, A:N.10, A:R.60, A:R.60, A:T.67, A:Y.77 Salt bridges: A:D.12 SAC-ARG-GLY-THR-GLN-THR-GLU.3: 19 residues within 4Å: Chain A: I.34, E.35, K.36, K.43 Chain B: K.9, D.12, R.60, N.61, F.62, G.63, S.64, Y.65, V.66, T.67, H.68, F.73, Y.75, Y.77, A.82 27 PLIP interactions: 24 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.62, B:F.73, B:F.73, B:Y.75, B:A.82 Hydrogen bonds: B:R.60, B:N.61, B:F.62, B:F.62, B:S.64, B:S.64, B:V.66, B:V.66, B:H.68, B:H.68, B:Y.77, B:Y.77, A:E.35, A:E.35, A:K.36 Water bridges: B:D.12, B:Y.65, B:Y.65, B:Y.75, B:Y.75 Salt bridges: B:K.9, B:D.12

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: M.29, N.33, E.35, I.38 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rapali, P. et al., Directed Evolution Reveals the Binding Motif Preference of the Lc8/Dynll Hub Protein and Predicts Large Numbers of Novel Binders in the Human Proteome. Plos One (2011)

Release Date

2011-05-04

Peptides

DYNEIN LIGHT CHAIN 2, CYTOPLASMIC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

DYNEIN LIGHT CHAIN 2, CYTOPLASMIC

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