SMTL ID : 2xqt.1

Microscopic rotary mechanism of ion translocation in the Fo complex of ATP synthases

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-15-mer

Ligands

15 x DCW: DICYCLOHEXYLUREA(Non-covalent)

DCW.1: 8 residues within 4Å: Chain A: A.59, E.62, I.66 Chain B: F.60, Y.67 Ligands: CVM.2, CVM.7, CVM.14 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.60, B:F.60, A:E.62 Hydrogen bonds: A:E.62 DCW.13: 9 residues within 4Å: Chain B: A.59, E.62, A.63, I.66 Chain C: F.60, A.63, Y.67 Ligands: CVM.14, CVM.22 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:E.62, B:A.63, C:F.60, C:A.63 Hydrogen bonds: B:E.62 DCW.21: 10 residues within 4Å: Chain C: A.59, E.62, A.63, I.66 Chain D: F.60, Y.67 Ligands: CVM.24, CVM.25, CVM.30, CVM.33 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:F.60, C:E.62, C:A.63 Hydrogen bonds: D:Y.67, C:E.62 DCW.35: 10 residues within 4Å: Chain D: A.59, E.62, A.63, I.66 Chain E: F.60, A.63, Y.67 Ligands: CVM.32, DCW.40, CVM.41 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain E Hydrophobic interactions: D:A.59, D:I.66, E:F.60, E:F.60, E:A.63 Hydrogen bonds: D:E.62 DCW.40: 9 residues within 4Å: Chain E: A.59, E.62, I.66 Chain F: F.60, Y.67 Ligands: DCW.35, CVM.44, CVM.45, CVM.57 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:I.66, F:F.60 Hydrogen bonds: E:E.62 DCW.51: 8 residues within 4Å: Chain F: A.59, E.62, I.66 Chain G: F.60, Y.67 Ligands: CVM.52, CVM.57, CVM.64 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain F Hydrophobic interactions: G:F.60, G:F.60, F:E.62 Hydrogen bonds: F:E.62 DCW.63: 9 residues within 4Å: Chain G: A.59, E.62, A.63, I.66 Chain H: F.60, A.63, Y.67 Ligands: CVM.64, CVM.72 5 PLIP interactions: 3 interactions with chain G, 2 interactions with chain H Hydrophobic interactions: G:E.62, G:A.63, H:F.60, H:A.63 Hydrogen bonds: G:E.62 DCW.71: 10 residues within 4Å: Chain H: A.59, E.62, A.63, I.66 Chain I: F.60, Y.67 Ligands: CVM.74, CVM.75, CVM.80, CVM.83 5 PLIP interactions: 3 interactions with chain H, 2 interactions with chain I Hydrophobic interactions: H:E.62, H:A.63, I:F.60 Hydrogen bonds: H:E.62, I:Y.67 DCW.85: 10 residues within 4Å: Chain I: A.59, E.62, A.63, I.66 Chain J: F.60, A.63, Y.67 Ligands: CVM.82, DCW.90, CVM.91 6 PLIP interactions: 3 interactions with chain J, 3 interactions with chain I Hydrophobic interactions: J:F.60, J:F.60, J:A.63, I:A.59, I:I.66 Hydrogen bonds: I:E.62 DCW.90: 9 residues within 4Å: Chain J: A.59, E.62, I.66 Chain K: F.60, Y.67 Ligands: DCW.85, CVM.94, CVM.95, CVM.107 3 PLIP interactions: 2 interactions with chain J, 1 interactions with chain K Hydrophobic interactions: J:I.66, K:F.60 Hydrogen bonds: J:E.62 DCW.101: 8 residues within 4Å: Chain K: A.59, E.62, I.66 Chain L: F.60, Y.67 Ligands: CVM.102, CVM.107, CVM.114 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain K Hydrophobic interactions: L:F.60, L:F.60, K:E.62 Hydrogen bonds: K:E.62 DCW.113: 9 residues within 4Å: Chain L: A.59, E.62, A.63, I.66 Chain M: F.60, A.63, Y.67 Ligands: CVM.114, CVM.122 5 PLIP interactions: 3 interactions with chain L, 2 interactions with chain M Hydrophobic interactions: L:E.62, L:A.63, M:F.60, M:A.63 Hydrogen bonds: L:E.62 DCW.121: 10 residues within 4Å: Chain M: A.59, E.62, A.63, I.66 Chain N: F.60, Y.67 Ligands: CVM.124, CVM.125, CVM.130, CVM.133 5 PLIP interactions: 2 interactions with chain N, 3 interactions with chain M Hydrophobic interactions: N:F.60, M:E.62, M:A.63 Hydrogen bonds: N:Y.67, M:E.62 DCW.135: 10 residues within 4Å: Chain N: A.59, E.62, A.63, I.66 Chain O: F.60, A.63, Y.67 Ligands: CVM.132, DCW.140, CVM.141 6 PLIP interactions: 3 interactions with chain O, 3 interactions with chain N Hydrophobic interactions: O:F.60, O:F.60, O:A.63, N:A.59, N:I.66 Hydrogen bonds: N:E.62 DCW.140: 9 residues within 4Å: Chain A: F.60, Y.67 Chain O: A.59, E.62, I.66 Ligands: CVM.7, DCW.135, CVM.144, CVM.145 3 PLIP interactions: 2 interactions with chain O, 1 interactions with chain A Hydrophobic interactions: O:I.66, A:F.60 Hydrogen bonds: O:E.62

135 x CVM: CYMAL-4(Non-functional Binders)(Non-covalent)

CVM.2: 4 residues within 4Å: Ligands: DCW.1, CVM.4, CVM.8, CVM.14 No protein-ligand interaction detected (PLIP) CVM.3: 3 residues within 4Å: Chain A: V.74 Ligands: CVM.9, CVM.149 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.74 CVM.4: 5 residues within 4Å: Chain A: L.69 Chain B: Y.67 Ligands: CVM.2, CVM.9, CVM.14 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.69, B:Y.67 CVM.5: 3 residues within 4Å: Chain A: L.56 Chain O: R.51, L.55 2 PLIP interactions: 1 interactions with chain O, 1 interactions with chain A Hydrophobic interactions: O:L.55, A:L.56 CVM.6: 9 residues within 4Å: Chain A: S.3, N.4, L.5, A.8, A.9 Chain B: L.5 Chain O: S.3 Ligands: CVM.11, CVM.134 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain O Hydrogen bonds: A:S.3, A:N.4, A:L.5, O:S.3 CVM.7: 8 residues within 4Å: Chain A: A.63, I.66, Y.67 Ligands: DCW.1, CVM.8, DCW.140, CVM.145, CVM.148 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.63, A:I.66, A:Y.67 CVM.8: 4 residues within 4Å: Chain A: L.69, V.70 Ligands: CVM.2, CVM.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.69, A:V.70 CVM.9: 5 residues within 4Å: Chain A: F.77 Chain B: V.74 Ligands: CVM.3, CVM.4, CVM.18 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.77, B:V.74 CVM.10: 3 residues within 4Å: Chain A: L.55, A.59 Ligands: CVM.12 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.55, A:A.59 CVM.11: 6 residues within 4Å: Chain B: L.5, A.9, I.12 Chain C: L.5 Ligands: CVM.6, CVM.23 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.5, B:A.9, B:I.12 Water bridges: B:L.5 CVM.12: 3 residues within 4Å: Chain A: L.55 Chain B: F.60 Ligands: CVM.10 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.55, A:L.55, B:F.60 CVM.14: 7 residues within 4Å: Chain B: A.63, I.66, Y.67 Ligands: DCW.1, CVM.2, CVM.4, DCW.13 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.63, B:I.66, B:Y.67 CVM.15: 4 residues within 4Å: Chain B: L.69, V.70, L.73 Ligands: CVM.22 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.69, B:V.70, B:L.73 CVM.16: 5 residues within 4Å: Chain B: F.77 Ligands: CVM.17, CVM.18, CVM.26, CVM.27 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.77, B:F.77 CVM.17: 4 residues within 4Å: Chain B: L.69 Ligands: CVM.16, CVM.22, CVM.24 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.69 CVM.18: 5 residues within 4Å: Chain B: L.73, F.77, A.78 Ligands: CVM.9, CVM.16 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.73, B:F.77, B:F.77, B:A.78 CVM.19: 2 residues within 4Å: Chain B: L.55, A.59 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.55, B:L.55, B:A.59 CVM.20: 3 residues within 4Å: Chain B: L.55 Chain C: L.56 Ligands: CVM.30 No protein-ligand interaction detected (PLIP) CVM.22: 6 residues within 4Å: Chain B: L.69 Chain C: Y.67 Ligands: DCW.13, CVM.15, CVM.17, CVM.24 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:Y.67, B:L.69 CVM.23: 10 residues within 4Å: Chain B: S.3 Chain C: S.3, N.4, L.5, A.8, A.9, I.12 Chain D: L.5 Ligands: CVM.11, CVM.31 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:A.8, C:I.12 Hydrogen bonds: C:S.3, C:L.5, B:S.3 CVM.24: 6 residues within 4Å: Chain C: A.63, Y.67 Ligands: CVM.17, DCW.21, CVM.22, CVM.25 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:A.63, C:Y.67 CVM.25: 6 residues within 4Å: Chain C: I.66 Chain D: Y.67 Ligands: DCW.21, CVM.24, CVM.28, CVM.32 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:I.66 CVM.26: 3 residues within 4Å: Chain C: I.66, L.69 Ligands: CVM.16 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.66, C:L.69 CVM.27: 4 residues within 4Å: Chain C: L.73, F.77 Ligands: CVM.16, CVM.29 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.73, C:F.77 CVM.28: 5 residues within 4Å: Chain C: L.69 Chain D: V.70 Ligands: CVM.25, CVM.29, CVM.32 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:V.70, C:L.69 CVM.29: 3 residues within 4Å: Chain C: F.77 Ligands: CVM.27, CVM.28 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.77, C:F.77 CVM.30: 4 residues within 4Å: Chain C: L.56, A.59 Ligands: CVM.20, DCW.21 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.56, C:A.59 CVM.31: 10 residues within 4Å: Chain C: S.3, N.4 Chain D: N.4, L.5, A.8, A.9, I.12 Chain E: L.5 Ligands: CVM.23, CVM.34 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:S.3, C:S.3, D:L.5 Hydrophobic interactions: D:A.8, D:I.12 CVM.32: 6 residues within 4Å: Chain D: A.63, I.66, Y.67 Ligands: CVM.25, CVM.28, DCW.35 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:A.63, D:I.66, D:Y.67 CVM.33: 2 residues within 4Å: Chain C: L.55 Ligands: DCW.21 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.55 CVM.34: 6 residues within 4Å: Chain E: L.5, A.8, A.9 Chain F: L.5 Ligands: CVM.31, CVM.56 4 PLIP interactions: 1 interactions with chain D, 2 interactions with chain E, 1 interactions with chain F Water bridges: D:S.3 Hydrophobic interactions: E:L.5, E:A.8, F:L.5 CVM.36: 2 residues within 4Å: Chain D: L.73, F.77 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.73, D:F.77 CVM.37: 3 residues within 4Å: Chain D: F.77 Ligands: CVM.43, CVM.47 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:F.77 CVM.38: 6 residues within 4Å: Chain C: R.51 Chain D: G.52, L.55, L.56, A.59 Ligands: CVM.39 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.55, D:A.59 CVM.39: 4 residues within 4Å: Chain D: L.55 Chain E: L.56 Ligands: CVM.38, CVM.50 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain D Hydrophobic interactions: E:L.56, D:L.55, D:L.55 CVM.41: 6 residues within 4Å: Chain D: I.66 Chain E: Y.67 Ligands: DCW.35, CVM.42, CVM.43, CVM.44 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:Y.67, D:I.66 CVM.42: 4 residues within 4Å: Chain D: I.66, V.70, L.73 Ligands: CVM.41 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:I.66, D:V.70, D:L.73 CVM.43: 6 residues within 4Å: Chain D: L.69 Chain E: Y.67, V.70 Ligands: CVM.37, CVM.41, CVM.44 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:Y.67, E:Y.67, E:V.70, D:L.69 CVM.44: 7 residues within 4Å: Chain E: A.63, I.66, Y.67 Ligands: DCW.40, CVM.41, CVM.43, CVM.45 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:A.63, E:I.66, E:I.66, E:Y.67 CVM.45: 6 residues within 4Å: Chain E: I.66 Chain F: Y.67 Ligands: DCW.40, CVM.44, CVM.46, CVM.57 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:Y.67, E:I.66 CVM.46: 5 residues within 4Å: Chain E: I.66, L.69, V.70, L.73 Ligands: CVM.45 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:I.66, E:L.69, E:V.70, E:L.73 CVM.47: 4 residues within 4Å: Chain E: L.73, V.74, F.77 Ligands: CVM.37 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.73, E:V.74, E:F.77 CVM.48: 3 residues within 4Å: Chain E: L.69 Ligands: CVM.49, CVM.57 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:L.69 CVM.49: 4 residues within 4Å: Chain E: F.77 Chain F: V.70 Ligands: CVM.48, CVM.53 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:V.70, E:F.77 CVM.50: 4 residues within 4Å: Chain E: G.52, L.55, A.59 Ligands: CVM.39 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.55, E:L.55, E:A.59 CVM.52: 4 residues within 4Å: Ligands: DCW.51, CVM.54, CVM.58, CVM.64 No protein-ligand interaction detected (PLIP) CVM.53: 3 residues within 4Å: Chain F: V.74 Ligands: CVM.49, CVM.59 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:V.74 CVM.54: 5 residues within 4Å: Chain F: L.69 Chain G: Y.67 Ligands: CVM.52, CVM.59, CVM.64 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain F Hydrophobic interactions: G:Y.67, F:L.69 CVM.55: 3 residues within 4Å: Chain E: R.51, L.55 Chain F: L.56 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:L.56, E:L.55 CVM.56: 9 residues within 4Å: Chain E: S.3 Chain F: S.3, N.4, L.5, A.8, A.9 Chain G: L.5 Ligands: CVM.34, CVM.61 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:S.3, F:N.4, F:L.5, E:S.3 CVM.57: 8 residues within 4Å: Chain F: A.63, I.66, Y.67 Ligands: DCW.40, CVM.45, CVM.48, DCW.51, CVM.58 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:A.63, F:I.66, F:Y.67 CVM.58: 4 residues within 4Å: Chain F: L.69, V.70 Ligands: CVM.52, CVM.57 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:L.69, F:V.70 CVM.59: 5 residues within 4Å: Chain F: F.77 Chain G: V.74 Ligands: CVM.53, CVM.54, CVM.68 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:F.77, G:V.74 CVM.60: 3 residues within 4Å: Chain F: L.55, A.59 Ligands: CVM.62 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:L.55, F:A.59 CVM.61: 6 residues within 4Å: Chain G: L.5, A.9, I.12 Chain H: L.5 Ligands: CVM.56, CVM.73 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:L.5, G:A.9, G:I.12 Water bridges: G:L.5 CVM.62: 3 residues within 4Å: Chain F: L.55 Chain G: F.60 Ligands: CVM.60 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:L.55, F:L.55, G:F.60 CVM.64: 7 residues within 4Å: Chain G: A.63, I.66, Y.67 Ligands: DCW.51, CVM.52, CVM.54, DCW.63 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:A.63, G:I.66, G:Y.67 CVM.65: 4 residues within 4Å: Chain G: L.69, V.70, L.73 Ligands: CVM.72 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:L.69, G:V.70, G:L.73 CVM.66: 5 residues within 4Å: Chain G: F.77 Ligands: CVM.67, CVM.68, CVM.76, CVM.77 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:F.77, G:F.77 CVM.67: 4 residues within 4Å: Chain G: L.69 Ligands: CVM.66, CVM.72, CVM.74 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:L.69 CVM.68: 5 residues within 4Å: Chain G: L.73, F.77, A.78 Ligands: CVM.59, CVM.66 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:L.73, G:F.77, G:F.77, G:A.78 CVM.69: 2 residues within 4Å: Chain G: L.55, A.59 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:L.55, G:L.55, G:A.59 CVM.70: 3 residues within 4Å: Chain G: L.55 Chain H: L.56 Ligands: CVM.80 No protein-ligand interaction detected (PLIP) CVM.72: 6 residues within 4Å: Chain G: L.69 Chain H: Y.67 Ligands: DCW.63, CVM.65, CVM.67, CVM.74 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G Hydrophobic interactions: H:Y.67, G:L.69 CVM.73: 10 residues within 4Å: Chain G: S.3 Chain H: S.3, N.4, L.5, A.8, A.9, I.12 Chain I: L.5 Ligands: CVM.61, CVM.81 5 PLIP interactions: 1 interactions with chain G, 4 interactions with chain H Hydrogen bonds: G:S.3, H:S.3, H:L.5 Hydrophobic interactions: H:A.8, H:I.12 CVM.74: 6 residues within 4Å: Chain H: A.63, Y.67 Ligands: CVM.67, DCW.71, CVM.72, CVM.75 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:A.63, H:Y.67 CVM.75: 6 residues within 4Å: Chain H: I.66 Chain I: Y.67 Ligands: DCW.71, CVM.74, CVM.78, CVM.82 1 PLIP interactions: 1 interactions with chain H Hydrophobic interactions: H:I.66 CVM.76: 3 residues within 4Å: Chain H: I.66, L.69 Ligands: CVM.66 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:I.66, H:L.69 CVM.77: 4 residues within 4Å: Chain H: L.73, F.77 Ligands: CVM.66, CVM.79 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:L.73, H:F.77 CVM.78: 5 residues within 4Å: Chain H: L.69 Chain I: V.70 Ligands: CVM.75, CVM.79, CVM.82 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain H Hydrophobic interactions: I:V.70, H:L.69 CVM.79: 3 residues within 4Å: Chain H: F.77 Ligands: CVM.77, CVM.78 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:F.77, H:F.77 CVM.80: 4 residues within 4Å: Chain H: L.56, A.59 Ligands: CVM.70, DCW.71 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:L.56, H:A.59 CVM.81: 10 residues within 4Å: Chain H: S.3, N.4 Chain I: N.4, L.5, A.8, A.9, I.12 Chain J: L.5 Ligands: CVM.73, CVM.84 5 PLIP interactions: 2 interactions with chain H, 3 interactions with chain I Hydrogen bonds: H:S.3, H:S.3, I:L.5 Hydrophobic interactions: I:A.8, I:I.12 CVM.82: 6 residues within 4Å: Chain I: A.63, I.66, Y.67 Ligands: CVM.75, CVM.78, DCW.85 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:A.63, I:I.66, I:Y.67 CVM.83: 2 residues within 4Å: Chain H: L.55 Ligands: DCW.71 1 PLIP interactions: 1 interactions with chain H Hydrophobic interactions: H:L.55 CVM.84: 6 residues within 4Å: Chain J: L.5, A.8, A.9 Chain K: L.5 Ligands: CVM.81, CVM.106 4 PLIP interactions: 1 interactions with chain I, 1 interactions with chain K, 2 interactions with chain J Water bridges: I:S.3 Hydrophobic interactions: K:L.5, J:L.5, J:A.8 CVM.86: 3 residues within 4Å: Chain I: L.73, V.74, F.77 2 PLIP interactions: 2 interactions with chain I Hydrophobic interactions: I:L.73, I:F.77 CVM.87: 3 residues within 4Å: Chain I: F.77 Ligands: CVM.93, CVM.97 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:F.77 CVM.88: 6 residues within 4Å: Chain H: R.51 Chain I: G.52, L.55, L.56, A.59 Ligands: CVM.89 2 PLIP interactions: 2 interactions with chain I Hydrophobic interactions: I:L.55, I:A.59 CVM.89: 4 residues within 4Å: Chain I: L.55 Chain J: L.56 Ligands: CVM.88, CVM.100 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain J Hydrophobic interactions: I:L.55, I:L.55, J:L.56 CVM.91: 6 residues within 4Å: Chain I: I.66 Chain J: Y.67 Ligands: DCW.85, CVM.92, CVM.93, CVM.94 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain J Hydrophobic interactions: I:I.66, J:Y.67 CVM.92: 4 residues within 4Å: Chain I: I.66, V.70, L.73 Ligands: CVM.91 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:I.66, I:V.70, I:L.73 CVM.93: 6 residues within 4Å: Chain I: L.69 Chain J: Y.67, V.70 Ligands: CVM.87, CVM.91, CVM.94 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain I Hydrophobic interactions: J:Y.67, J:Y.67, J:V.70, I:L.69 CVM.94: 7 residues within 4Å: Chain J: A.63, I.66, Y.67 Ligands: DCW.90, CVM.91, CVM.93, CVM.95 4 PLIP interactions: 4 interactions with chain J Hydrophobic interactions: J:A.63, J:I.66, J:I.66, J:Y.67 CVM.95: 6 residues within 4Å: Chain J: I.66 Chain K: Y.67 Ligands: DCW.90, CVM.94, CVM.96, CVM.107 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain J Hydrophobic interactions: K:Y.67, J:I.66 CVM.96: 5 residues within 4Å: Chain J: I.66, L.69, V.70, L.73 Ligands: CVM.95 4 PLIP interactions: 4 interactions with chain J Hydrophobic interactions: J:I.66, J:L.69, J:V.70, J:L.73 CVM.97: 4 residues within 4Å: Chain J: L.73, V.74, F.77 Ligands: CVM.87 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:L.73, J:V.74, J:F.77 CVM.98: 3 residues within 4Å: Chain J: L.69 Ligands: CVM.99, CVM.107 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:L.69 CVM.99: 4 residues within 4Å: Chain J: F.77 Chain K: V.70 Ligands: CVM.98, CVM.103 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain J Hydrophobic interactions: K:V.70, J:F.77 CVM.100: 4 residues within 4Å: Chain J: G.52, L.55, A.59 Ligands: CVM.89 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:L.55, J:L.55, J:A.59 CVM.102: 4 residues within 4Å: Ligands: DCW.101, CVM.104, CVM.108, CVM.114 No protein-ligand interaction detected (PLIP) CVM.103: 3 residues within 4Å: Chain K: V.74 Ligands: CVM.99, CVM.109 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:V.74 CVM.104: 5 residues within 4Å: Chain K: L.69 Chain L: Y.67 Ligands: CVM.102, CVM.109, CVM.114 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: L:Y.67, K:L.69 CVM.105: 3 residues within 4Å: Chain J: R.51, L.55 Chain K: L.56 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain K Hydrophobic interactions: J:L.55, K:L.56 CVM.106: 9 residues within 4Å: Chain J: S.3 Chain K: S.3, N.4, L.5, A.8, A.9 Chain L: L.5 Ligands: CVM.84, CVM.111 4 PLIP interactions: 3 interactions with chain K, 1 interactions with chain J Hydrogen bonds: K:S.3, K:N.4, K:L.5, J:S.3 CVM.107: 8 residues within 4Å: Chain K: A.63, I.66, Y.67 Ligands: DCW.90, CVM.95, CVM.98, DCW.101, CVM.108 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:A.63, K:I.66, K:Y.67 CVM.108: 4 residues within 4Å: Chain K: L.69, V.70 Ligands: CVM.102, CVM.107 2 PLIP interactions: 2 interactions with chain K Hydrophobic interactions: K:L.69, K:V.70 CVM.109: 5 residues within 4Å: Chain K: F.77 Chain L: V.74 Ligands: CVM.103, CVM.104, CVM.118 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: L:V.74, K:F.77 CVM.110: 3 residues within 4Å: Chain K: L.55, A.59 Ligands: CVM.112 2 PLIP interactions: 2 interactions with chain K Hydrophobic interactions: K:L.55, K:A.59 CVM.111: 6 residues within 4Å: Chain L: L.5, A.9, I.12 Chain M: L.5 Ligands: CVM.106, CVM.123 4 PLIP interactions: 4 interactions with chain L Hydrophobic interactions: L:L.5, L:A.9, L:I.12 Water bridges: L:L.5 CVM.112: 3 residues within 4Å: Chain K: L.55 Chain L: F.60 Ligands: CVM.110 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain L Hydrophobic interactions: K:L.55, K:L.55, L:F.60 CVM.114: 7 residues within 4Å: Chain L: A.63, I.66, Y.67 Ligands: DCW.101, CVM.102, CVM.104, DCW.113 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:A.63, L:I.66, L:Y.67 CVM.115: 4 residues within 4Å: Chain L: L.69, V.70, L.73 Ligands: CVM.122 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:L.69, L:V.70, L:L.73 CVM.116: 5 residues within 4Å: Chain L: F.77 Ligands: CVM.117, CVM.118, CVM.126, CVM.127 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:F.77, L:F.77 CVM.117: 4 residues within 4Å: Chain L: L.69 Ligands: CVM.116, CVM.122, CVM.124 1 PLIP interactions: 1 interactions with chain L Hydrophobic interactions: L:L.69 CVM.118: 5 residues within 4Å: Chain L: L.73, F.77, A.78 Ligands: CVM.109, CVM.116 4 PLIP interactions: 4 interactions with chain L Hydrophobic interactions: L:L.73, L:F.77, L:F.77, L:A.78 CVM.119: 2 residues within 4Å: Chain L: L.55, A.59 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:L.55, L:L.55, L:A.59 CVM.120: 3 residues within 4Å: Chain L: L.55 Chain M: L.56 Ligands: CVM.130 No protein-ligand interaction detected (PLIP) CVM.122: 6 residues within 4Å: Chain L: L.69 Chain M: Y.67 Ligands: DCW.113, CVM.115, CVM.117, CVM.124 2 PLIP interactions: 1 interactions with chain M, 1 interactions with chain L Hydrophobic interactions: M:Y.67, L:L.69 CVM.123: 10 residues within 4Å: Chain L: S.3 Chain M: S.3, N.4, L.5, A.8, A.9, I.12 Chain N: L.5 Ligands: CVM.111, CVM.131 5 PLIP interactions: 1 interactions with chain L, 4 interactions with chain M Hydrogen bonds: L:S.3, M:S.3, M:L.5 Hydrophobic interactions: M:A.8, M:I.12 CVM.124: 6 residues within 4Å: Chain M: A.63, Y.67 Ligands: CVM.117, DCW.121, CVM.122, CVM.125 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:A.63, M:Y.67 CVM.125: 6 residues within 4Å: Chain M: I.66 Chain N: Y.67 Ligands: DCW.121, CVM.124, CVM.128, CVM.132 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:I.66 CVM.126: 3 residues within 4Å: Chain M: I.66, L.69 Ligands: CVM.116 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:I.66, M:L.69 CVM.127: 4 residues within 4Å: Chain M: L.73, F.77 Ligands: CVM.116, CVM.129 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:L.73, M:F.77 CVM.128: 5 residues within 4Å: Chain M: L.69 Chain N: V.70 Ligands: CVM.125, CVM.129, CVM.132 2 PLIP interactions: 1 interactions with chain N, 1 interactions with chain M Hydrophobic interactions: N:V.70, M:L.69 CVM.129: 3 residues within 4Å: Chain M: F.77 Ligands: CVM.127, CVM.128 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:F.77, M:F.77 CVM.130: 4 residues within 4Å: Chain M: L.56, A.59 Ligands: CVM.120, DCW.121 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:L.56, M:A.59 CVM.131: 10 residues within 4Å: Chain M: S.3, N.4 Chain N: N.4, L.5, A.8, A.9, I.12 Chain O: L.5 Ligands: CVM.123, CVM.134 5 PLIP interactions: 3 interactions with chain N, 2 interactions with chain M Hydrophobic interactions: N:A.8, N:I.12 Hydrogen bonds: N:L.5, M:S.3, M:S.3 CVM.132: 6 residues within 4Å: Chain N: A.63, I.66, Y.67 Ligands: CVM.125, CVM.128, DCW.135 3 PLIP interactions: 3 interactions with chain N Hydrophobic interactions: N:A.63, N:I.66, N:Y.67 CVM.133: 2 residues within 4Å: Chain M: L.55 Ligands: DCW.121 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:L.55 CVM.134: 6 residues within 4Å: Chain A: L.5 Chain O: L.5, A.8, A.9 Ligands: CVM.6, CVM.131 4 PLIP interactions: 1 interactions with chain N, 2 interactions with chain O, 1 interactions with chain A Water bridges: N:S.3 Hydrophobic interactions: O:L.5, O:A.8, A:L.5 CVM.136: 2 residues within 4Å: Chain N: L.73, F.77 2 PLIP interactions: 2 interactions with chain N Hydrophobic interactions: N:L.73, N:F.77 CVM.137: 3 residues within 4Å: Chain N: F.77 Ligands: CVM.143, CVM.147 1 PLIP interactions: 1 interactions with chain N Hydrophobic interactions: N:F.77 CVM.138: 6 residues within 4Å: Chain M: R.51 Chain N: G.52, L.55, L.56, A.59 Ligands: CVM.139 2 PLIP interactions: 2 interactions with chain N Hydrophobic interactions: N:L.55, N:A.59 CVM.139: 4 residues within 4Å: Chain N: L.55 Chain O: L.56 Ligands: CVM.138, CVM.150 3 PLIP interactions: 2 interactions with chain N, 1 interactions with chain O Hydrophobic interactions: N:L.55, N:L.55, O:L.56 CVM.141: 6 residues within 4Å: Chain N: I.66 Chain O: Y.67 Ligands: DCW.135, CVM.142, CVM.143, CVM.144 2 PLIP interactions: 1 interactions with chain N, 1 interactions with chain O Hydrophobic interactions: N:I.66, O:Y.67 CVM.142: 4 residues within 4Å: Chain N: I.66, V.70, L.73 Ligands: CVM.141 3 PLIP interactions: 3 interactions with chain N Hydrophobic interactions: N:I.66, N:V.70, N:L.73 CVM.143: 6 residues within 4Å: Chain N: L.69 Chain O: Y.67, V.70 Ligands: CVM.137, CVM.141, CVM.144 4 PLIP interactions: 1 interactions with chain N, 3 interactions with chain O Hydrophobic interactions: N:L.69, O:Y.67, O:Y.67, O:V.70 CVM.144: 7 residues within 4Å: Chain O: A.63, I.66, Y.67 Ligands: DCW.140, CVM.141, CVM.143, CVM.145 4 PLIP interactions: 4 interactions with chain O Hydrophobic interactions: O:A.63, O:I.66, O:I.66, O:Y.67 CVM.145: 6 residues within 4Å: Chain A: Y.67 Chain O: I.66 Ligands: CVM.7, DCW.140, CVM.144, CVM.146 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain O Hydrophobic interactions: A:Y.67, O:I.66 CVM.146: 5 residues within 4Å: Chain O: I.66, L.69, V.70, L.73 Ligands: CVM.145 4 PLIP interactions: 4 interactions with chain O Hydrophobic interactions: O:I.66, O:L.69, O:V.70, O:L.73 CVM.147: 4 residues within 4Å: Chain O: L.73, V.74, F.77 Ligands: CVM.137 3 PLIP interactions: 3 interactions with chain O Hydrophobic interactions: O:L.73, O:V.74, O:F.77 CVM.148: 3 residues within 4Å: Chain O: L.69 Ligands: CVM.7, CVM.149 1 PLIP interactions: 1 interactions with chain O Hydrophobic interactions: O:L.69 CVM.149: 4 residues within 4Å: Chain A: V.70 Chain O: F.77 Ligands: CVM.3, CVM.148 2 PLIP interactions: 1 interactions with chain O, 1 interactions with chain A Hydrophobic interactions: O:F.77, A:V.70 CVM.150: 4 residues within 4Å: Chain O: G.52, L.55, A.59 Ligands: CVM.139 3 PLIP interactions: 3 interactions with chain O Hydrophobic interactions: O:L.55, O:L.55, O:A.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pogoryelov, D. et al., Microscopic Rotary Mechanism of Ion Translocation in the Fo Complex of ATP Synthases. Nat.Chem.Biol. (2010)

Release Date

2010-10-27

Peptides

ATP SYNTHASE C CHAIN: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

K
A

L
B

M
C

N
D

O
E

Membrane

We predict this structure to be a membrane protein.
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ATP SYNTHASE C CHAIN

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