- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-15-mer
- Ligands
- 15 x DCW: DICYCLOHEXYLUREA(Non-covalent)
- 135 x CVM: CYMAL-4(Non-functional Binders)(Non-covalent)
CVM.2: 4 residues within 4Å:- Ligands: DCW.1, CVM.4, CVM.8, CVM.14
No protein-ligand interaction detected (PLIP)CVM.3: 3 residues within 4Å:- Chain A: V.74
- Ligands: CVM.9, CVM.149
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.74
CVM.4: 5 residues within 4Å:- Chain A: L.69
- Chain B: Y.67
- Ligands: CVM.2, CVM.9, CVM.14
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.69, B:Y.67
CVM.5: 3 residues within 4Å:- Chain A: L.56
- Chain O: R.51, L.55
2 PLIP interactions:1 interactions with chain O, 1 interactions with chain A- Hydrophobic interactions: O:L.55, A:L.56
CVM.6: 9 residues within 4Å:- Chain A: S.3, N.4, L.5, A.8, A.9
- Chain B: L.5
- Chain O: S.3
- Ligands: CVM.11, CVM.134
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain O- Hydrogen bonds: A:S.3, A:N.4, A:L.5, O:S.3
CVM.7: 8 residues within 4Å:- Chain A: A.63, I.66, Y.67
- Ligands: DCW.1, CVM.8, DCW.140, CVM.145, CVM.148
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:A.63, A:I.66, A:Y.67
CVM.8: 4 residues within 4Å:- Chain A: L.69, V.70
- Ligands: CVM.2, CVM.7
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.69, A:V.70
CVM.9: 5 residues within 4Å:- Chain A: F.77
- Chain B: V.74
- Ligands: CVM.3, CVM.4, CVM.18
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.77, B:V.74
CVM.10: 3 residues within 4Å:- Chain A: L.55, A.59
- Ligands: CVM.12
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.55, A:A.59
CVM.11: 6 residues within 4Å:- Chain B: L.5, A.9, I.12
- Chain C: L.5
- Ligands: CVM.6, CVM.23
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.5, B:A.9, B:I.12
- Water bridges: B:L.5
CVM.12: 3 residues within 4Å:- Chain A: L.55
- Chain B: F.60
- Ligands: CVM.10
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.55, A:L.55, B:F.60
CVM.14: 7 residues within 4Å:- Chain B: A.63, I.66, Y.67
- Ligands: DCW.1, CVM.2, CVM.4, DCW.13
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.63, B:I.66, B:Y.67
CVM.15: 4 residues within 4Å:- Chain B: L.69, V.70, L.73
- Ligands: CVM.22
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.69, B:V.70, B:L.73
CVM.16: 5 residues within 4Å:- Chain B: F.77
- Ligands: CVM.17, CVM.18, CVM.26, CVM.27
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.77, B:F.77
CVM.17: 4 residues within 4Å:- Chain B: L.69
- Ligands: CVM.16, CVM.22, CVM.24
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.69
CVM.18: 5 residues within 4Å:- Chain B: L.73, F.77, A.78
- Ligands: CVM.9, CVM.16
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.73, B:F.77, B:F.77, B:A.78
CVM.19: 2 residues within 4Å:- Chain B: L.55, A.59
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.55, B:L.55, B:A.59
CVM.20: 3 residues within 4Å:- Chain B: L.55
- Chain C: L.56
- Ligands: CVM.30
No protein-ligand interaction detected (PLIP)CVM.22: 6 residues within 4Å:- Chain B: L.69
- Chain C: Y.67
- Ligands: DCW.13, CVM.15, CVM.17, CVM.24
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:Y.67, B:L.69
CVM.23: 10 residues within 4Å:- Chain B: S.3
- Chain C: S.3, N.4, L.5, A.8, A.9, I.12
- Chain D: L.5
- Ligands: CVM.11, CVM.31
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:A.8, C:I.12
- Hydrogen bonds: C:S.3, C:L.5, B:S.3
CVM.24: 6 residues within 4Å:- Chain C: A.63, Y.67
- Ligands: CVM.17, DCW.21, CVM.22, CVM.25
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:A.63, C:Y.67
CVM.25: 6 residues within 4Å:- Chain C: I.66
- Chain D: Y.67
- Ligands: DCW.21, CVM.24, CVM.28, CVM.32
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:I.66
CVM.26: 3 residues within 4Å:- Chain C: I.66, L.69
- Ligands: CVM.16
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:I.66, C:L.69
CVM.27: 4 residues within 4Å:- Chain C: L.73, F.77
- Ligands: CVM.16, CVM.29
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.73, C:F.77
CVM.28: 5 residues within 4Å:- Chain C: L.69
- Chain D: V.70
- Ligands: CVM.25, CVM.29, CVM.32
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:V.70, C:L.69
CVM.29: 3 residues within 4Å:- Chain C: F.77
- Ligands: CVM.27, CVM.28
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.77, C:F.77
CVM.30: 4 residues within 4Å:- Chain C: L.56, A.59
- Ligands: CVM.20, DCW.21
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.56, C:A.59
CVM.31: 10 residues within 4Å:- Chain C: S.3, N.4
- Chain D: N.4, L.5, A.8, A.9, I.12
- Chain E: L.5
- Ligands: CVM.23, CVM.34
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:S.3, C:S.3, D:L.5
- Hydrophobic interactions: D:A.8, D:I.12
CVM.32: 6 residues within 4Å:- Chain D: A.63, I.66, Y.67
- Ligands: CVM.25, CVM.28, DCW.35
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:A.63, D:I.66, D:Y.67
CVM.33: 2 residues within 4Å:- Chain C: L.55
- Ligands: DCW.21
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.55
CVM.34: 6 residues within 4Å:- Chain E: L.5, A.8, A.9
- Chain F: L.5
- Ligands: CVM.31, CVM.56
4 PLIP interactions:1 interactions with chain D, 2 interactions with chain E, 1 interactions with chain F- Water bridges: D:S.3
- Hydrophobic interactions: E:L.5, E:A.8, F:L.5
CVM.36: 2 residues within 4Å:- Chain D: L.73, F.77
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:L.73, D:F.77
CVM.37: 3 residues within 4Å:- Chain D: F.77
- Ligands: CVM.43, CVM.47
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:F.77
CVM.38: 6 residues within 4Å:- Chain C: R.51
- Chain D: G.52, L.55, L.56, A.59
- Ligands: CVM.39
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:L.55, D:A.59
CVM.39: 4 residues within 4Å:- Chain D: L.55
- Chain E: L.56
- Ligands: CVM.38, CVM.50
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain D- Hydrophobic interactions: E:L.56, D:L.55, D:L.55
CVM.41: 6 residues within 4Å:- Chain D: I.66
- Chain E: Y.67
- Ligands: DCW.35, CVM.42, CVM.43, CVM.44
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:Y.67, D:I.66
CVM.42: 4 residues within 4Å:- Chain D: I.66, V.70, L.73
- Ligands: CVM.41
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:I.66, D:V.70, D:L.73
CVM.43: 6 residues within 4Å:- Chain D: L.69
- Chain E: Y.67, V.70
- Ligands: CVM.37, CVM.41, CVM.44
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:Y.67, E:Y.67, E:V.70, D:L.69
CVM.44: 7 residues within 4Å:- Chain E: A.63, I.66, Y.67
- Ligands: DCW.40, CVM.41, CVM.43, CVM.45
4 PLIP interactions:4 interactions with chain E- Hydrophobic interactions: E:A.63, E:I.66, E:I.66, E:Y.67
CVM.45: 6 residues within 4Å:- Chain E: I.66
- Chain F: Y.67
- Ligands: DCW.40, CVM.44, CVM.46, CVM.57
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:Y.67, E:I.66
CVM.46: 5 residues within 4Å:- Chain E: I.66, L.69, V.70, L.73
- Ligands: CVM.45
4 PLIP interactions:4 interactions with chain E- Hydrophobic interactions: E:I.66, E:L.69, E:V.70, E:L.73
CVM.47: 4 residues within 4Å:- Chain E: L.73, V.74, F.77
- Ligands: CVM.37
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:L.73, E:V.74, E:F.77
CVM.48: 3 residues within 4Å:- Chain E: L.69
- Ligands: CVM.49, CVM.57
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:L.69
CVM.49: 4 residues within 4Å:- Chain E: F.77
- Chain F: V.70
- Ligands: CVM.48, CVM.53
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:V.70, E:F.77
CVM.50: 4 residues within 4Å:- Chain E: G.52, L.55, A.59
- Ligands: CVM.39
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:L.55, E:L.55, E:A.59
CVM.52: 4 residues within 4Å:- Ligands: DCW.51, CVM.54, CVM.58, CVM.64
No protein-ligand interaction detected (PLIP)CVM.53: 3 residues within 4Å:- Chain F: V.74
- Ligands: CVM.49, CVM.59
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:V.74
CVM.54: 5 residues within 4Å:- Chain F: L.69
- Chain G: Y.67
- Ligands: CVM.52, CVM.59, CVM.64
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain F- Hydrophobic interactions: G:Y.67, F:L.69
CVM.55: 3 residues within 4Å:- Chain E: R.51, L.55
- Chain F: L.56
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:L.56, E:L.55
CVM.56: 9 residues within 4Å:- Chain E: S.3
- Chain F: S.3, N.4, L.5, A.8, A.9
- Chain G: L.5
- Ligands: CVM.34, CVM.61
4 PLIP interactions:3 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:S.3, F:N.4, F:L.5, E:S.3
CVM.57: 8 residues within 4Å:- Chain F: A.63, I.66, Y.67
- Ligands: DCW.40, CVM.45, CVM.48, DCW.51, CVM.58
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:A.63, F:I.66, F:Y.67
CVM.58: 4 residues within 4Å:- Chain F: L.69, V.70
- Ligands: CVM.52, CVM.57
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:L.69, F:V.70
CVM.59: 5 residues within 4Å:- Chain F: F.77
- Chain G: V.74
- Ligands: CVM.53, CVM.54, CVM.68
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain G- Hydrophobic interactions: F:F.77, G:V.74
CVM.60: 3 residues within 4Å:- Chain F: L.55, A.59
- Ligands: CVM.62
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:L.55, F:A.59
CVM.61: 6 residues within 4Å:- Chain G: L.5, A.9, I.12
- Chain H: L.5
- Ligands: CVM.56, CVM.73
4 PLIP interactions:4 interactions with chain G- Hydrophobic interactions: G:L.5, G:A.9, G:I.12
- Water bridges: G:L.5
CVM.62: 3 residues within 4Å:- Chain F: L.55
- Chain G: F.60
- Ligands: CVM.60
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain G- Hydrophobic interactions: F:L.55, F:L.55, G:F.60
CVM.64: 7 residues within 4Å:- Chain G: A.63, I.66, Y.67
- Ligands: DCW.51, CVM.52, CVM.54, DCW.63
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:A.63, G:I.66, G:Y.67
CVM.65: 4 residues within 4Å:- Chain G: L.69, V.70, L.73
- Ligands: CVM.72
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:L.69, G:V.70, G:L.73
CVM.66: 5 residues within 4Å:- Chain G: F.77
- Ligands: CVM.67, CVM.68, CVM.76, CVM.77
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:F.77, G:F.77
CVM.67: 4 residues within 4Å:- Chain G: L.69
- Ligands: CVM.66, CVM.72, CVM.74
1 PLIP interactions:1 interactions with chain G- Hydrophobic interactions: G:L.69
CVM.68: 5 residues within 4Å:- Chain G: L.73, F.77, A.78
- Ligands: CVM.59, CVM.66
4 PLIP interactions:4 interactions with chain G- Hydrophobic interactions: G:L.73, G:F.77, G:F.77, G:A.78
CVM.69: 2 residues within 4Å:- Chain G: L.55, A.59
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:L.55, G:L.55, G:A.59
CVM.70: 3 residues within 4Å:- Chain G: L.55
- Chain H: L.56
- Ligands: CVM.80
No protein-ligand interaction detected (PLIP)CVM.72: 6 residues within 4Å:- Chain G: L.69
- Chain H: Y.67
- Ligands: DCW.63, CVM.65, CVM.67, CVM.74
2 PLIP interactions:1 interactions with chain H, 1 interactions with chain G- Hydrophobic interactions: H:Y.67, G:L.69
CVM.73: 10 residues within 4Å:- Chain G: S.3
- Chain H: S.3, N.4, L.5, A.8, A.9, I.12
- Chain I: L.5
- Ligands: CVM.61, CVM.81
5 PLIP interactions:1 interactions with chain G, 4 interactions with chain H- Hydrogen bonds: G:S.3, H:S.3, H:L.5
- Hydrophobic interactions: H:A.8, H:I.12
CVM.74: 6 residues within 4Å:- Chain H: A.63, Y.67
- Ligands: CVM.67, DCW.71, CVM.72, CVM.75
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:A.63, H:Y.67
CVM.75: 6 residues within 4Å:- Chain H: I.66
- Chain I: Y.67
- Ligands: DCW.71, CVM.74, CVM.78, CVM.82
1 PLIP interactions:1 interactions with chain H- Hydrophobic interactions: H:I.66
CVM.76: 3 residues within 4Å:- Chain H: I.66, L.69
- Ligands: CVM.66
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:I.66, H:L.69
CVM.77: 4 residues within 4Å:- Chain H: L.73, F.77
- Ligands: CVM.66, CVM.79
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:L.73, H:F.77
CVM.78: 5 residues within 4Å:- Chain H: L.69
- Chain I: V.70
- Ligands: CVM.75, CVM.79, CVM.82
2 PLIP interactions:1 interactions with chain I, 1 interactions with chain H- Hydrophobic interactions: I:V.70, H:L.69
CVM.79: 3 residues within 4Å:- Chain H: F.77
- Ligands: CVM.77, CVM.78
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:F.77, H:F.77
CVM.80: 4 residues within 4Å:- Chain H: L.56, A.59
- Ligands: CVM.70, DCW.71
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:L.56, H:A.59
CVM.81: 10 residues within 4Å:- Chain H: S.3, N.4
- Chain I: N.4, L.5, A.8, A.9, I.12
- Chain J: L.5
- Ligands: CVM.73, CVM.84
5 PLIP interactions:2 interactions with chain H, 3 interactions with chain I- Hydrogen bonds: H:S.3, H:S.3, I:L.5
- Hydrophobic interactions: I:A.8, I:I.12
CVM.82: 6 residues within 4Å:- Chain I: A.63, I.66, Y.67
- Ligands: CVM.75, CVM.78, DCW.85
3 PLIP interactions:3 interactions with chain I- Hydrophobic interactions: I:A.63, I:I.66, I:Y.67
CVM.83: 2 residues within 4Å:- Chain H: L.55
- Ligands: DCW.71
1 PLIP interactions:1 interactions with chain H- Hydrophobic interactions: H:L.55
CVM.84: 6 residues within 4Å:- Chain J: L.5, A.8, A.9
- Chain K: L.5
- Ligands: CVM.81, CVM.106
4 PLIP interactions:1 interactions with chain I, 1 interactions with chain K, 2 interactions with chain J- Water bridges: I:S.3
- Hydrophobic interactions: K:L.5, J:L.5, J:A.8
CVM.86: 3 residues within 4Å:- Chain I: L.73, V.74, F.77
2 PLIP interactions:2 interactions with chain I- Hydrophobic interactions: I:L.73, I:F.77
CVM.87: 3 residues within 4Å:- Chain I: F.77
- Ligands: CVM.93, CVM.97
1 PLIP interactions:1 interactions with chain I- Hydrophobic interactions: I:F.77
CVM.88: 6 residues within 4Å:- Chain H: R.51
- Chain I: G.52, L.55, L.56, A.59
- Ligands: CVM.89
2 PLIP interactions:2 interactions with chain I- Hydrophobic interactions: I:L.55, I:A.59
CVM.89: 4 residues within 4Å:- Chain I: L.55
- Chain J: L.56
- Ligands: CVM.88, CVM.100
3 PLIP interactions:2 interactions with chain I, 1 interactions with chain J- Hydrophobic interactions: I:L.55, I:L.55, J:L.56
CVM.91: 6 residues within 4Å:- Chain I: I.66
- Chain J: Y.67
- Ligands: DCW.85, CVM.92, CVM.93, CVM.94
2 PLIP interactions:1 interactions with chain I, 1 interactions with chain J- Hydrophobic interactions: I:I.66, J:Y.67
CVM.92: 4 residues within 4Å:- Chain I: I.66, V.70, L.73
- Ligands: CVM.91
3 PLIP interactions:3 interactions with chain I- Hydrophobic interactions: I:I.66, I:V.70, I:L.73
CVM.93: 6 residues within 4Å:- Chain I: L.69
- Chain J: Y.67, V.70
- Ligands: CVM.87, CVM.91, CVM.94
4 PLIP interactions:3 interactions with chain J, 1 interactions with chain I- Hydrophobic interactions: J:Y.67, J:Y.67, J:V.70, I:L.69
CVM.94: 7 residues within 4Å:- Chain J: A.63, I.66, Y.67
- Ligands: DCW.90, CVM.91, CVM.93, CVM.95
4 PLIP interactions:4 interactions with chain J- Hydrophobic interactions: J:A.63, J:I.66, J:I.66, J:Y.67
CVM.95: 6 residues within 4Å:- Chain J: I.66
- Chain K: Y.67
- Ligands: DCW.90, CVM.94, CVM.96, CVM.107
2 PLIP interactions:1 interactions with chain K, 1 interactions with chain J- Hydrophobic interactions: K:Y.67, J:I.66
CVM.96: 5 residues within 4Å:- Chain J: I.66, L.69, V.70, L.73
- Ligands: CVM.95
4 PLIP interactions:4 interactions with chain J- Hydrophobic interactions: J:I.66, J:L.69, J:V.70, J:L.73
CVM.97: 4 residues within 4Å:- Chain J: L.73, V.74, F.77
- Ligands: CVM.87
3 PLIP interactions:3 interactions with chain J- Hydrophobic interactions: J:L.73, J:V.74, J:F.77
CVM.98: 3 residues within 4Å:- Chain J: L.69
- Ligands: CVM.99, CVM.107
1 PLIP interactions:1 interactions with chain J- Hydrophobic interactions: J:L.69
CVM.99: 4 residues within 4Å:- Chain J: F.77
- Chain K: V.70
- Ligands: CVM.98, CVM.103
2 PLIP interactions:1 interactions with chain K, 1 interactions with chain J- Hydrophobic interactions: K:V.70, J:F.77
CVM.100: 4 residues within 4Å:- Chain J: G.52, L.55, A.59
- Ligands: CVM.89
3 PLIP interactions:3 interactions with chain J- Hydrophobic interactions: J:L.55, J:L.55, J:A.59
CVM.102: 4 residues within 4Å:- Ligands: DCW.101, CVM.104, CVM.108, CVM.114
No protein-ligand interaction detected (PLIP)CVM.103: 3 residues within 4Å:- Chain K: V.74
- Ligands: CVM.99, CVM.109
1 PLIP interactions:1 interactions with chain K- Hydrophobic interactions: K:V.74
CVM.104: 5 residues within 4Å:- Chain K: L.69
- Chain L: Y.67
- Ligands: CVM.102, CVM.109, CVM.114
2 PLIP interactions:1 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: L:Y.67, K:L.69
CVM.105: 3 residues within 4Å:- Chain J: R.51, L.55
- Chain K: L.56
2 PLIP interactions:1 interactions with chain J, 1 interactions with chain K- Hydrophobic interactions: J:L.55, K:L.56
CVM.106: 9 residues within 4Å:- Chain J: S.3
- Chain K: S.3, N.4, L.5, A.8, A.9
- Chain L: L.5
- Ligands: CVM.84, CVM.111
4 PLIP interactions:3 interactions with chain K, 1 interactions with chain J- Hydrogen bonds: K:S.3, K:N.4, K:L.5, J:S.3
CVM.107: 8 residues within 4Å:- Chain K: A.63, I.66, Y.67
- Ligands: DCW.90, CVM.95, CVM.98, DCW.101, CVM.108
3 PLIP interactions:3 interactions with chain K- Hydrophobic interactions: K:A.63, K:I.66, K:Y.67
CVM.108: 4 residues within 4Å:- Chain K: L.69, V.70
- Ligands: CVM.102, CVM.107
2 PLIP interactions:2 interactions with chain K- Hydrophobic interactions: K:L.69, K:V.70
CVM.109: 5 residues within 4Å:- Chain K: F.77
- Chain L: V.74
- Ligands: CVM.103, CVM.104, CVM.118
2 PLIP interactions:1 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: L:V.74, K:F.77
CVM.110: 3 residues within 4Å:- Chain K: L.55, A.59
- Ligands: CVM.112
2 PLIP interactions:2 interactions with chain K- Hydrophobic interactions: K:L.55, K:A.59
CVM.111: 6 residues within 4Å:- Chain L: L.5, A.9, I.12
- Chain M: L.5
- Ligands: CVM.106, CVM.123
4 PLIP interactions:4 interactions with chain L- Hydrophobic interactions: L:L.5, L:A.9, L:I.12
- Water bridges: L:L.5
CVM.112: 3 residues within 4Å:- Chain K: L.55
- Chain L: F.60
- Ligands: CVM.110
3 PLIP interactions:2 interactions with chain K, 1 interactions with chain L- Hydrophobic interactions: K:L.55, K:L.55, L:F.60
CVM.114: 7 residues within 4Å:- Chain L: A.63, I.66, Y.67
- Ligands: DCW.101, CVM.102, CVM.104, DCW.113
3 PLIP interactions:3 interactions with chain L- Hydrophobic interactions: L:A.63, L:I.66, L:Y.67
CVM.115: 4 residues within 4Å:- Chain L: L.69, V.70, L.73
- Ligands: CVM.122
3 PLIP interactions:3 interactions with chain L- Hydrophobic interactions: L:L.69, L:V.70, L:L.73
CVM.116: 5 residues within 4Å:- Chain L: F.77
- Ligands: CVM.117, CVM.118, CVM.126, CVM.127
2 PLIP interactions:2 interactions with chain L- Hydrophobic interactions: L:F.77, L:F.77
CVM.117: 4 residues within 4Å:- Chain L: L.69
- Ligands: CVM.116, CVM.122, CVM.124
1 PLIP interactions:1 interactions with chain L- Hydrophobic interactions: L:L.69
CVM.118: 5 residues within 4Å:- Chain L: L.73, F.77, A.78
- Ligands: CVM.109, CVM.116
4 PLIP interactions:4 interactions with chain L- Hydrophobic interactions: L:L.73, L:F.77, L:F.77, L:A.78
CVM.119: 2 residues within 4Å:- Chain L: L.55, A.59
3 PLIP interactions:3 interactions with chain L- Hydrophobic interactions: L:L.55, L:L.55, L:A.59
CVM.120: 3 residues within 4Å:- Chain L: L.55
- Chain M: L.56
- Ligands: CVM.130
No protein-ligand interaction detected (PLIP)CVM.122: 6 residues within 4Å:- Chain L: L.69
- Chain M: Y.67
- Ligands: DCW.113, CVM.115, CVM.117, CVM.124
2 PLIP interactions:1 interactions with chain M, 1 interactions with chain L- Hydrophobic interactions: M:Y.67, L:L.69
CVM.123: 10 residues within 4Å:- Chain L: S.3
- Chain M: S.3, N.4, L.5, A.8, A.9, I.12
- Chain N: L.5
- Ligands: CVM.111, CVM.131
5 PLIP interactions:1 interactions with chain L, 4 interactions with chain M- Hydrogen bonds: L:S.3, M:S.3, M:L.5
- Hydrophobic interactions: M:A.8, M:I.12
CVM.124: 6 residues within 4Å:- Chain M: A.63, Y.67
- Ligands: CVM.117, DCW.121, CVM.122, CVM.125
2 PLIP interactions:2 interactions with chain M- Hydrophobic interactions: M:A.63, M:Y.67
CVM.125: 6 residues within 4Å:- Chain M: I.66
- Chain N: Y.67
- Ligands: DCW.121, CVM.124, CVM.128, CVM.132
1 PLIP interactions:1 interactions with chain M- Hydrophobic interactions: M:I.66
CVM.126: 3 residues within 4Å:- Chain M: I.66, L.69
- Ligands: CVM.116
2 PLIP interactions:2 interactions with chain M- Hydrophobic interactions: M:I.66, M:L.69
CVM.127: 4 residues within 4Å:- Chain M: L.73, F.77
- Ligands: CVM.116, CVM.129
2 PLIP interactions:2 interactions with chain M- Hydrophobic interactions: M:L.73, M:F.77
CVM.128: 5 residues within 4Å:- Chain M: L.69
- Chain N: V.70
- Ligands: CVM.125, CVM.129, CVM.132
2 PLIP interactions:1 interactions with chain N, 1 interactions with chain M- Hydrophobic interactions: N:V.70, M:L.69
CVM.129: 3 residues within 4Å:- Chain M: F.77
- Ligands: CVM.127, CVM.128
2 PLIP interactions:2 interactions with chain M- Hydrophobic interactions: M:F.77, M:F.77
CVM.130: 4 residues within 4Å:- Chain M: L.56, A.59
- Ligands: CVM.120, DCW.121
2 PLIP interactions:2 interactions with chain M- Hydrophobic interactions: M:L.56, M:A.59
CVM.131: 10 residues within 4Å:- Chain M: S.3, N.4
- Chain N: N.4, L.5, A.8, A.9, I.12
- Chain O: L.5
- Ligands: CVM.123, CVM.134
5 PLIP interactions:3 interactions with chain N, 2 interactions with chain M- Hydrophobic interactions: N:A.8, N:I.12
- Hydrogen bonds: N:L.5, M:S.3, M:S.3
CVM.132: 6 residues within 4Å:- Chain N: A.63, I.66, Y.67
- Ligands: CVM.125, CVM.128, DCW.135
3 PLIP interactions:3 interactions with chain N- Hydrophobic interactions: N:A.63, N:I.66, N:Y.67
CVM.133: 2 residues within 4Å:- Chain M: L.55
- Ligands: DCW.121
1 PLIP interactions:1 interactions with chain M- Hydrophobic interactions: M:L.55
CVM.134: 6 residues within 4Å:- Chain A: L.5
- Chain O: L.5, A.8, A.9
- Ligands: CVM.6, CVM.131
4 PLIP interactions:1 interactions with chain N, 2 interactions with chain O, 1 interactions with chain A- Water bridges: N:S.3
- Hydrophobic interactions: O:L.5, O:A.8, A:L.5
CVM.136: 2 residues within 4Å:- Chain N: L.73, F.77
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:L.73, N:F.77
CVM.137: 3 residues within 4Å:- Chain N: F.77
- Ligands: CVM.143, CVM.147
1 PLIP interactions:1 interactions with chain N- Hydrophobic interactions: N:F.77
CVM.138: 6 residues within 4Å:- Chain M: R.51
- Chain N: G.52, L.55, L.56, A.59
- Ligands: CVM.139
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:L.55, N:A.59
CVM.139: 4 residues within 4Å:- Chain N: L.55
- Chain O: L.56
- Ligands: CVM.138, CVM.150
3 PLIP interactions:2 interactions with chain N, 1 interactions with chain O- Hydrophobic interactions: N:L.55, N:L.55, O:L.56
CVM.141: 6 residues within 4Å:- Chain N: I.66
- Chain O: Y.67
- Ligands: DCW.135, CVM.142, CVM.143, CVM.144
2 PLIP interactions:1 interactions with chain N, 1 interactions with chain O- Hydrophobic interactions: N:I.66, O:Y.67
CVM.142: 4 residues within 4Å:- Chain N: I.66, V.70, L.73
- Ligands: CVM.141
3 PLIP interactions:3 interactions with chain N- Hydrophobic interactions: N:I.66, N:V.70, N:L.73
CVM.143: 6 residues within 4Å:- Chain N: L.69
- Chain O: Y.67, V.70
- Ligands: CVM.137, CVM.141, CVM.144
4 PLIP interactions:1 interactions with chain N, 3 interactions with chain O- Hydrophobic interactions: N:L.69, O:Y.67, O:Y.67, O:V.70
CVM.144: 7 residues within 4Å:- Chain O: A.63, I.66, Y.67
- Ligands: DCW.140, CVM.141, CVM.143, CVM.145
4 PLIP interactions:4 interactions with chain O- Hydrophobic interactions: O:A.63, O:I.66, O:I.66, O:Y.67
CVM.145: 6 residues within 4Å:- Chain A: Y.67
- Chain O: I.66
- Ligands: CVM.7, DCW.140, CVM.144, CVM.146
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain O- Hydrophobic interactions: A:Y.67, O:I.66
CVM.146: 5 residues within 4Å:- Chain O: I.66, L.69, V.70, L.73
- Ligands: CVM.145
4 PLIP interactions:4 interactions with chain O- Hydrophobic interactions: O:I.66, O:L.69, O:V.70, O:L.73
CVM.147: 4 residues within 4Å:- Chain O: L.73, V.74, F.77
- Ligands: CVM.137
3 PLIP interactions:3 interactions with chain O- Hydrophobic interactions: O:L.73, O:V.74, O:F.77
CVM.148: 3 residues within 4Å:- Chain O: L.69
- Ligands: CVM.7, CVM.149
1 PLIP interactions:1 interactions with chain O- Hydrophobic interactions: O:L.69
CVM.149: 4 residues within 4Å:- Chain A: V.70
- Chain O: F.77
- Ligands: CVM.3, CVM.148
2 PLIP interactions:1 interactions with chain O, 1 interactions with chain A- Hydrophobic interactions: O:F.77, A:V.70
CVM.150: 4 residues within 4Å:- Chain O: G.52, L.55, A.59
- Ligands: CVM.139
3 PLIP interactions:3 interactions with chain O- Hydrophobic interactions: O:L.55, O:L.55, O:A.59
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pogoryelov, D. et al., Microscopic Rotary Mechanism of Ion Translocation in the Fo Complex of ATP Synthases. Nat.Chem.Biol. (2010)
- Release Date
- 2010-10-27
- Peptides
- ATP SYNTHASE C CHAIN: ABCDEFGHIJKLMNO
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
EK
AL
BM
CN
DO
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-15-mer
- Ligands
- 15 x DCW: DICYCLOHEXYLUREA(Non-covalent)
- 135 x CVM: CYMAL-4(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pogoryelov, D. et al., Microscopic Rotary Mechanism of Ion Translocation in the Fo Complex of ATP Synthases. Nat.Chem.Biol. (2010)
- Release Date
- 2010-10-27
- Peptides
- ATP SYNTHASE C CHAIN: ABCDEFGHIJKLMNO
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
EK
AL
BM
CN
DO
E - Membrane
-
We predict this structure to be a membrane protein.