SMTL ID : 2xqu.1

Microscopic rotary mechanism of ion translocation in the Fo complex of ATP synthases

CVM.1: 8 residues within 4Å: Chain A: S.3, N.4, L.5, A.9 Chain B: L.5 Chain O: S.3 Ligands: CVM.12, CVM.155 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain O Hydrogen bonds: A:L.5, O:S.3 Water bridges: A:N.4, A:N.4 CVM.2: 6 residues within 4Å: Chain A: A.59, F.60, A.63, Y.67 Chain O: E.62 Ligands: CVM.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.63 CVM.3: 7 residues within 4Å: Chain A: A.63, I.66, Y.67 Ligands: CVM.2, CVM.6, CVM.159, CVM.162 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.63, A:I.66, A:Y.67 CVM.4: 4 residues within 4Å: Chain A: A.59, E.62, I.66 Ligands: CVM.13 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.62, A:I.66 CVM.5: 5 residues within 4Å: Chain A: I.66 Chain B: Y.67 Ligands: CVM.6, CVM.8, CVM.13 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.66 CVM.6: 6 residues within 4Å: Chain A: I.66, L.69, V.70, L.73 Ligands: CVM.3, CVM.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.66, A:L.69, A:V.70, A:L.73 CVM.7: 5 residues within 4Å: Chain A: L.73, V.74, A.78 Ligands: CVM.9, CVM.163 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.73, A:L.73, A:V.74, A:A.78 CVM.8: 4 residues within 4Å: Chain A: L.69 Ligands: CVM.5, CVM.9, CVM.14 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.69 CVM.9: 4 residues within 4Å: Chain A: F.77 Ligands: CVM.7, CVM.8, CVM.18 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.77, A:F.77, A:F.77 CVM.10: 3 residues within 4Å: Chain A: L.56 Chain O: L.55 Ligands: CVM.11 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain O Hydrophobic interactions: A:L.56, O:L.55 CVM.11: 5 residues within 4Å: Chain A: G.52, L.55, A.59 Chain O: R.51 Ligands: CVM.10 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.55, A:L.55, A:A.59 CVM.12: 9 residues within 4Å: Chain A: S.3, N.4 Chain B: N.4, L.5, A.8, A.9 Chain C: L.5 Ligands: CVM.1, CVM.23 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.8 Hydrogen bonds: B:L.5, A:S.3 CVM.13: 8 residues within 4Å: Chain A: E.62 Chain B: A.59, F.60, A.63 Ligands: CVM.4, CVM.5, CVM.21, CVM.22 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.60, B:A.63 CVM.14: 5 residues within 4Å: Chain B: A.63, I.66, Y.67 Ligands: CVM.8, CVM.15 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.63, B:I.66, B:Y.67 CVM.15: 3 residues within 4Å: Chain B: A.59, E.62 Ligands: CVM.14 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.62 CVM.16: 4 residues within 4Å: Chain B: I.66 Chain C: Y.67 Ligands: CVM.17, CVM.25 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.66 CVM.17: 7 residues within 4Å: Chain B: I.66, L.69, V.70, L.73 Ligands: CVM.16, CVM.19, CVM.20 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.66, B:L.69, B:V.70, B:L.73 CVM.18: 5 residues within 4Å: Chain B: L.73, V.74, A.78 Ligands: CVM.9, CVM.20 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.73, B:V.74, B:A.78 CVM.19: 4 residues within 4Å: Chain B: L.69 Chain C: V.70 Ligands: CVM.17, CVM.25 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:V.70, B:L.69 CVM.20: 3 residues within 4Å: Chain B: F.77 Ligands: CVM.17, CVM.18 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.77, B:F.77 CVM.21: 5 residues within 4Å: Chain A: R.51, L.55 Chain B: L.56, F.60 Ligands: CVM.13 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.60, A:L.55 CVM.22: 6 residues within 4Å: Chain A: R.51 Chain B: G.52, L.55, L.56, A.59 Ligands: CVM.13 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.55, B:A.59 CVM.23: 10 residues within 4Å: Chain B: S.3 Chain C: S.3, N.4, L.5, A.8, A.9, I.12 Chain D: L.5 Ligands: CVM.12, CVM.34 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:I.12 Hydrogen bonds: C:S.3, C:L.5, B:S.3, B:S.3 CVM.24: 3 residues within 4Å: Chain B: E.62 Chain C: F.60, A.63 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.60, C:A.63 CVM.25: 5 residues within 4Å: Chain C: A.63, I.66, Y.67 Ligands: CVM.16, CVM.19 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:A.63, C:I.66, C:Y.67 CVM.26: 4 residues within 4Å: Chain C: A.59, E.62, I.66 Ligands: CVM.35 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:E.62, C:I.66 CVM.27: 4 residues within 4Å: Chain C: I.66 Chain D: Y.67 Ligands: CVM.35, CVM.36 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:I.66 CVM.28: 4 residues within 4Å: Chain C: I.66, L.69, V.70, L.73 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:I.66, C:L.69, C:V.70, C:L.73 CVM.29: 3 residues within 4Å: Chain C: L.73, V.74, A.78 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.73, C:V.74, C:A.78 CVM.30: 4 residues within 4Å: Chain C: L.69 Chain D: Y.67 Ligands: CVM.31, CVM.36 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:Y.67, C:L.69 CVM.31: 3 residues within 4Å: Chain C: F.77 Chain D: V.70 Ligands: CVM.30 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:V.70, C:F.77 CVM.32: 3 residues within 4Å: Chain B: R.51 Chain C: L.56 Ligands: CVM.33 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.56 CVM.33: 6 residues within 4Å: Chain B: R.51 Chain C: G.52, L.55, L.56, A.59 Ligands: CVM.32 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.55, C:A.59 CVM.34: 10 residues within 4Å: Chain C: S.3 Chain D: S.3, N.4, L.5, A.8, A.9, I.12 Chain E: L.5 Ligands: CVM.23, CVM.45 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:I.12 Hydrogen bonds: D:L.5, C:S.3 CVM.35: 7 residues within 4Å: Chain C: E.62 Chain D: A.59, A.63, Y.67 Ligands: CVM.26, CVM.27, CVM.43 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:A.59, D:A.63 CVM.36: 5 residues within 4Å: Chain D: A.63, I.66 Ligands: CVM.27, CVM.30, CVM.37 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:A.63, D:I.66 CVM.37: 5 residues within 4Å: Chain D: A.59, E.62, I.66 Chain E: F.60 Ligands: CVM.36 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain D Hydrophobic interactions: E:F.60, D:E.62, D:I.66 CVM.38: 5 residues within 4Å: Chain D: I.66 Chain E: Y.67 Ligands: CVM.39, CVM.46, CVM.47 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:I.66 CVM.39: 4 residues within 4Å: Chain D: I.66, L.69, L.73 Ligands: CVM.38 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:I.66, D:L.69, D:L.73 CVM.40: 3 residues within 4Å: Chain D: L.73, V.74, F.77 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:L.73, D:V.74, D:F.77 CVM.41: 3 residues within 4Å: Chain D: L.69 Chain E: V.70 Ligands: CVM.42 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:V.70, D:L.69 CVM.42: 5 residues within 4Å: Chain D: F.77 Chain E: V.70, A.78 Ligands: CVM.41, CVM.51 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain E Hydrophobic interactions: D:F.77, E:V.70, E:A.78 CVM.43: 4 residues within 4Å: Chain C: R.51, L.55 Chain D: L.56 Ligands: CVM.35 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:L.55, D:L.56 CVM.44: 4 residues within 4Å: Chain C: R.51 Chain D: G.52, L.55, A.59 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:A.59 CVM.45: 10 residues within 4Å: Chain D: S.3, N.4 Chain E: N.4, L.5, A.8, A.9, I.12 Chain F: L.5 Ligands: CVM.34, CVM.56 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:I.12 Hydrogen bonds: E:L.5, D:S.3 Water bridges: E:S.3, E:N.4 CVM.46: 6 residues within 4Å: Chain D: E.62 Chain E: A.59, F.60, A.63 Ligands: CVM.38, CVM.54 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:A.63 CVM.47: 5 residues within 4Å: Chain E: A.63, I.66, Y.67 Ligands: CVM.38, CVM.48 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:A.63, E:I.66, E:Y.67 CVM.48: 4 residues within 4Å: Chain E: A.59, E.62, I.66 Ligands: CVM.47 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:E.62, E:E.62, E:I.66 CVM.49: 4 residues within 4Å: Chain E: I.66 Ligands: CVM.50, CVM.52, CVM.58 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:I.66 CVM.50: 6 residues within 4Å: Chain E: I.66, L.69, V.70 Ligands: CVM.49, CVM.51, CVM.52 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:I.66, E:L.69, E:V.70 CVM.51: 3 residues within 4Å: Chain E: V.74 Ligands: CVM.42, CVM.50 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:V.74 CVM.52: 5 residues within 4Å: Chain E: L.69 Ligands: CVM.49, CVM.50, CVM.53, CVM.58 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:L.69 CVM.53: 4 residues within 4Å: Chain E: L.73, F.77 Ligands: CVM.52, CVM.62 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.73, E:F.77, E:F.77 CVM.54: 3 residues within 4Å: Chain D: L.55 Chain E: L.56 Ligands: CVM.46 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:L.56, D:L.55 CVM.55: 5 residues within 4Å: Chain D: R.51 Chain E: G.52, L.55, L.56, A.59 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.55, E:L.56, E:A.59 CVM.56: 8 residues within 4Å: Chain E: S.3 Chain F: S.3, N.4, L.5, A.9 Chain G: L.5 Ligands: CVM.45, CVM.67 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain F Hydrogen bonds: E:S.3, F:L.5 Water bridges: F:N.4, F:N.4 CVM.57: 6 residues within 4Å: Chain E: E.62 Chain F: A.59, F.60, A.63, Y.67 Ligands: CVM.58 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:A.63 CVM.58: 7 residues within 4Å: Chain F: A.63, I.66, Y.67 Ligands: CVM.49, CVM.52, CVM.57, CVM.61 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:A.63, F:I.66, F:Y.67 CVM.59: 4 residues within 4Å: Chain F: A.59, E.62, I.66 Ligands: CVM.68 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:E.62, F:I.66 CVM.60: 5 residues within 4Å: Chain F: I.66 Chain G: Y.67 Ligands: CVM.61, CVM.63, CVM.68 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:I.66 CVM.61: 6 residues within 4Å: Chain F: I.66, L.69, V.70, L.73 Ligands: CVM.58, CVM.60 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:I.66, F:L.69, F:V.70, F:L.73 CVM.62: 5 residues within 4Å: Chain F: L.73, V.74, A.78 Ligands: CVM.53, CVM.64 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:L.73, F:L.73, F:V.74, F:A.78 CVM.63: 4 residues within 4Å: Chain F: L.69 Ligands: CVM.60, CVM.64, CVM.69 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:L.69 CVM.64: 4 residues within 4Å: Chain F: F.77 Ligands: CVM.62, CVM.63, CVM.73 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:F.77, F:F.77, F:F.77 CVM.65: 3 residues within 4Å: Chain E: L.55 Chain F: L.56 Ligands: CVM.66 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:L.55, F:L.56 CVM.66: 5 residues within 4Å: Chain E: R.51 Chain F: G.52, L.55, A.59 Ligands: CVM.65 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:L.55, F:L.55, F:A.59 CVM.67: 9 residues within 4Å: Chain F: S.3, N.4 Chain G: N.4, L.5, A.8, A.9 Chain H: L.5 Ligands: CVM.56, CVM.78 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain G Hydrogen bonds: F:S.3, G:L.5 Hydrophobic interactions: G:A.8 CVM.68: 8 residues within 4Å: Chain F: E.62 Chain G: A.59, F.60, A.63 Ligands: CVM.59, CVM.60, CVM.76, CVM.77 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:F.60, G:A.63 CVM.69: 5 residues within 4Å: Chain G: A.63, I.66, Y.67 Ligands: CVM.63, CVM.70 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:A.63, G:I.66, G:Y.67 CVM.70: 3 residues within 4Å: Chain G: A.59, E.62 Ligands: CVM.69 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:E.62 CVM.71: 4 residues within 4Å: Chain G: I.66 Chain H: Y.67 Ligands: CVM.72, CVM.80 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:I.66 CVM.72: 7 residues within 4Å: Chain G: I.66, L.69, V.70, L.73 Ligands: CVM.71, CVM.74, CVM.75 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:I.66, G:L.69, G:V.70, G:L.73 CVM.73: 5 residues within 4Å: Chain G: L.73, V.74, A.78 Ligands: CVM.64, CVM.75 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:L.73, G:V.74, G:A.78 CVM.74: 4 residues within 4Å: Chain G: L.69 Chain H: V.70 Ligands: CVM.72, CVM.80 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G Hydrophobic interactions: H:V.70, G:L.69 CVM.75: 3 residues within 4Å: Chain G: F.77 Ligands: CVM.72, CVM.73 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:F.77, G:F.77 CVM.76: 5 residues within 4Å: Chain F: R.51, L.55 Chain G: L.56, F.60 Ligands: CVM.68 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:L.55, G:F.60 CVM.77: 6 residues within 4Å: Chain F: R.51 Chain G: G.52, L.55, L.56, A.59 Ligands: CVM.68 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:L.55, G:A.59 CVM.78: 10 residues within 4Å: Chain G: S.3 Chain H: S.3, N.4, L.5, A.8, A.9, I.12 Chain I: L.5 Ligands: CVM.67, CVM.89 5 PLIP interactions: 3 interactions with chain H, 2 interactions with chain G Hydrophobic interactions: H:I.12 Hydrogen bonds: H:S.3, H:L.5, G:S.3, G:S.3 CVM.79: 3 residues within 4Å: Chain G: E.62 Chain H: F.60, A.63 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:F.60, H:A.63 CVM.80: 5 residues within 4Å: Chain H: A.63, I.66, Y.67 Ligands: CVM.71, CVM.74 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:A.63, H:I.66, H:Y.67 CVM.81: 4 residues within 4Å: Chain H: A.59, E.62, I.66 Ligands: CVM.90 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:E.62, H:I.66 CVM.82: 4 residues within 4Å: Chain H: I.66 Chain I: Y.67 Ligands: CVM.90, CVM.91 1 PLIP interactions: 1 interactions with chain H Hydrophobic interactions: H:I.66 CVM.83: 4 residues within 4Å: Chain H: I.66, L.69, V.70, L.73 4 PLIP interactions: 4 interactions with chain H Hydrophobic interactions: H:I.66, H:L.69, H:V.70, H:L.73 CVM.84: 3 residues within 4Å: Chain H: L.73, V.74, A.78 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:L.73, H:V.74, H:A.78 CVM.85: 4 residues within 4Å: Chain H: L.69 Chain I: Y.67 Ligands: CVM.86, CVM.91 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain I Hydrophobic interactions: H:L.69, I:Y.67 CVM.86: 3 residues within 4Å: Chain H: F.77 Chain I: V.70 Ligands: CVM.85 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain I Hydrophobic interactions: H:F.77, I:V.70 CVM.87: 3 residues within 4Å: Chain G: R.51