SMTL ID : 2xqu.1

Microscopic rotary mechanism of ion translocation in the Fo complex of ATP synthases

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-15-mer

Ligands

165 x CVM: CYMAL-4(Non-covalent)

CVM.1: 8 residues within 4Å: Chain A: S.3, N.4, L.5, A.9 Chain B: L.5 Chain O: S.3 Ligands: CVM.12, CVM.155 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain O Hydrogen bonds: A:L.5, O:S.3 Water bridges: A:N.4, A:N.4 CVM.2: 6 residues within 4Å: Chain A: A.59, F.60, A.63, Y.67 Chain O: E.62 Ligands: CVM.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.63 CVM.3: 7 residues within 4Å: Chain A: A.63, I.66, Y.67 Ligands: CVM.2, CVM.6, CVM.159, CVM.162 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.63, A:I.66, A:Y.67 CVM.4: 4 residues within 4Å: Chain A: A.59, E.62, I.66 Ligands: CVM.13 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.62, A:I.66 CVM.5: 5 residues within 4Å: Chain A: I.66 Chain B: Y.67 Ligands: CVM.6, CVM.8, CVM.13 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.66 CVM.6: 6 residues within 4Å: Chain A: I.66, L.69, V.70, L.73 Ligands: CVM.3, CVM.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.66, A:L.69, A:V.70, A:L.73 CVM.7: 5 residues within 4Å: Chain A: L.73, V.74, A.78 Ligands: CVM.9, CVM.163 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.73, A:L.73, A:V.74, A:A.78 CVM.8: 4 residues within 4Å: Chain A: L.69 Ligands: CVM.5, CVM.9, CVM.14 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.69 CVM.9: 4 residues within 4Å: Chain A: F.77 Ligands: CVM.7, CVM.8, CVM.18 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.77, A:F.77, A:F.77 CVM.10: 3 residues within 4Å: Chain A: L.56 Chain O: L.55 Ligands: CVM.11 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain O Hydrophobic interactions: A:L.56, O:L.55 CVM.11: 5 residues within 4Å: Chain A: G.52, L.55, A.59 Chain O: R.51 Ligands: CVM.10 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.55, A:L.55, A:A.59 CVM.12: 9 residues within 4Å: Chain A: S.3, N.4 Chain B: N.4, L.5, A.8, A.9 Chain C: L.5 Ligands: CVM.1, CVM.23 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.8 Hydrogen bonds: B:L.5, A:S.3 CVM.13: 8 residues within 4Å: Chain A: E.62 Chain B: A.59, F.60, A.63 Ligands: CVM.4, CVM.5, CVM.21, CVM.22 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.60, B:A.63 CVM.14: 5 residues within 4Å: Chain B: A.63, I.66, Y.67 Ligands: CVM.8, CVM.15 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.63, B:I.66, B:Y.67 CVM.15: 3 residues within 4Å: Chain B: A.59, E.62 Ligands: CVM.14 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.62 CVM.16: 4 residues within 4Å: Chain B: I.66 Chain C: Y.67 Ligands: CVM.17, CVM.25 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.66 CVM.17: 7 residues within 4Å: Chain B: I.66, L.69, V.70, L.73 Ligands: CVM.16, CVM.19, CVM.20 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.66, B:L.69, B:V.70, B:L.73 CVM.18: 5 residues within 4Å: Chain B: L.73, V.74, A.78 Ligands: CVM.9, CVM.20 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.73, B:V.74, B:A.78 CVM.19: 4 residues within 4Å: Chain B: L.69 Chain C: V.70 Ligands: CVM.17, CVM.25 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:V.70, B:L.69 CVM.20: 3 residues within 4Å: Chain B: F.77 Ligands: CVM.17, CVM.18 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.77, B:F.77 CVM.21: 5 residues within 4Å: Chain A: R.51, L.55 Chain B: L.56, F.60 Ligands: CVM.13 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.60, A:L.55 CVM.22: 6 residues within 4Å: Chain A: R.51 Chain B: G.52, L.55, L.56, A.59 Ligands: CVM.13 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.55, B:A.59 CVM.23: 10 residues within 4Å: Chain B: S.3 Chain C: S.3, N.4, L.5, A.8, A.9, I.12 Chain D: L.5 Ligands: CVM.12, CVM.34 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:I.12 Hydrogen bonds: C:S.3, C:L.5, B:S.3, B:S.3 CVM.24: 3 residues within 4Å: Chain B: E.62 Chain C: F.60, A.63 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.60, C:A.63 CVM.25: 5 residues within 4Å: Chain C: A.63, I.66, Y.67 Ligands: CVM.16, CVM.19 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:A.63, C:I.66, C:Y.67 CVM.26: 4 residues within 4Å: Chain C: A.59, E.62, I.66 Ligands: CVM.35 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:E.62, C:I.66 CVM.27: 4 residues within 4Å: Chain C: I.66 Chain D: Y.67 Ligands: CVM.35, CVM.36 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:I.66 CVM.28: 4 residues within 4Å: Chain C: I.66, L.69, V.70, L.73 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:I.66, C:L.69, C:V.70, C:L.73 CVM.29: 3 residues within 4Å: Chain C: L.73, V.74, A.78 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.73, C:V.74, C:A.78 CVM.30: 4 residues within 4Å: Chain C: L.69 Chain D: Y.67 Ligands: CVM.31, CVM.36 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:Y.67, C:L.69 CVM.31: 3 residues within 4Å: Chain C: F.77 Chain D: V.70 Ligands: CVM.30 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:V.70, C:F.77 CVM.32: 3 residues within 4Å: Chain B: R.51 Chain C: L.56 Ligands: CVM.33 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.56 CVM.33: 6 residues within 4Å: Chain B: R.51 Chain C: G.52, L.55, L.56, A.59 Ligands: CVM.32 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.55, C:A.59 CVM.34: 10 residues within 4Å: Chain C: S.3 Chain D: S.3, N.4, L.5, A.8, A.9, I.12 Chain E: L.5 Ligands: CVM.23, CVM.45 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:I.12 Hydrogen bonds: D:L.5, C:S.3 CVM.35: 7 residues within 4Å: Chain C: E.62 Chain D: A.59, A.63, Y.67 Ligands: CVM.26, CVM.27, CVM.43 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:A.59, D:A.63 CVM.36: 5 residues within 4Å: Chain D: A.63, I.66 Ligands: CVM.27, CVM.30, CVM.37 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:A.63, D:I.66 CVM.37: 5 residues within 4Å: Chain D: A.59, E.62, I.66 Chain E: F.60 Ligands: CVM.36 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain D Hydrophobic interactions: E:F.60, D:E.62, D:I.66 CVM.38: 5 residues within 4Å: Chain D: I.66 Chain E: Y.67 Ligands: CVM.39, CVM.46, CVM.47 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:I.66 CVM.39: 4 residues within 4Å: Chain D: I.66, L.69, L.73 Ligands: CVM.38 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:I.66, D:L.69, D:L.73 CVM.40: 3 residues within 4Å: Chain D: L.73, V.74, F.77 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:L.73, D:V.74, D:F.77 CVM.41: 3 residues within 4Å: Chain D: L.69 Chain E: V.70 Ligands: CVM.42 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:V.70, D:L.69 CVM.42: 5 residues within 4Å: Chain D: F.77 Chain E: V.70, A.78 Ligands: CVM.41, CVM.51 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain E Hydrophobic interactions: D:F.77, E:V.70, E:A.78 CVM.43: 4 residues within 4Å: Chain C: R.51, L.55 Chain D: L.56 Ligands: CVM.35 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:L.55, D:L.56 CVM.44: 4 residues within 4Å: Chain C: R.51 Chain D: G.52, L.55, A.59 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:A.59 CVM.45: 10 residues within 4Å: Chain D: S.3, N.4 Chain E: N.4, L.5, A.8, A.9, I.12 Chain F: L.5 Ligands: CVM.34, CVM.56 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:I.12 Hydrogen bonds: E:L.5, D:S.3 Water bridges: E:S.3, E:N.4 CVM.46: 6 residues within 4Å: Chain D: E.62 Chain E: A.59, F.60, A.63 Ligands: CVM.38, CVM.54 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:A.63 CVM.47: 5 residues within 4Å: Chain E: A.63, I.66, Y.67 Ligands: CVM.38, CVM.48 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:A.63, E:I.66, E:Y.67 CVM.48: 4 residues within 4Å: Chain E: A.59, E.62, I.66 Ligands: CVM.47 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:E.62, E:E.62, E:I.66 CVM.49: 4 residues within 4Å: Chain E: I.66 Ligands: CVM.50, CVM.52, CVM.58 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:I.66 CVM.50: 6 residues within 4Å: Chain E: I.66, L.69, V.70 Ligands: CVM.49, CVM.51, CVM.52 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:I.66, E:L.69, E:V.70 CVM.51: 3 residues within 4Å: Chain E: V.74 Ligands: CVM.42, CVM.50 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:V.74 CVM.52: 5 residues within 4Å: Chain E: L.69 Ligands: CVM.49, CVM.50, CVM.53, CVM.58 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:L.69 CVM.53: 4 residues within 4Å: Chain E: L.73, F.77 Ligands: CVM.52, CVM.62 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.73, E:F.77, E:F.77 CVM.54: 3 residues within 4Å: Chain D: L.55 Chain E: L.56 Ligands: CVM.46 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:L.56, D:L.55 CVM.55: 5 residues within 4Å: Chain D: R.51 Chain E: G.52, L.55, L.56, A.59 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.55, E:L.56, E:A.59 CVM.56: 8 residues within 4Å: Chain E: S.3 Chain F: S.3, N.4, L.5, A.9 Chain G: L.5 Ligands: CVM.45, CVM.67 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain F Hydrogen bonds: E:S.3, F:L.5 Water bridges: F:N.4, F:N.4 CVM.57: 6 residues within 4Å: Chain E: E.62 Chain F: A.59, F.60, A.63, Y.67 Ligands: CVM.58 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:A.63 CVM.58: 7 residues within 4Å: Chain F: A.63, I.66, Y.67 Ligands: CVM.49, CVM.52, CVM.57, CVM.61 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:A.63, F:I.66, F:Y.67 CVM.59: 4 residues within 4Å: Chain F: A.59, E.62, I.66 Ligands: CVM.68 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:E.62, F:I.66 CVM.60: 5 residues within 4Å: Chain F: I.66 Chain G: Y.67 Ligands: CVM.61, CVM.63, CVM.68 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:I.66 CVM.61: 6 residues within 4Å: Chain F: I.66, L.69, V.70, L.73 Ligands: CVM.58, CVM.60 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:I.66, F:L.69, F:V.70, F:L.73 CVM.62: 5 residues within 4Å: Chain F: L.73, V.74, A.78 Ligands: CVM.53, CVM.64 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:L.73, F:L.73, F:V.74, F:A.78 CVM.63: 4 residues within 4Å: Chain F: L.69 Ligands: CVM.60, CVM.64, CVM.69 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:L.69 CVM.64: 4 residues within 4Å: Chain F: F.77 Ligands: CVM.62, CVM.63, CVM.73 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:F.77, F:F.77, F:F.77 CVM.65: 3 residues within 4Å: Chain E: L.55 Chain F: L.56 Ligands: CVM.66 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:L.55, F:L.56 CVM.66: 5 residues within 4Å: Chain E: R.51 Chain F: G.52, L.55, A.59 Ligands: CVM.65 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:L.55, F:L.55, F:A.59 CVM.67: 9 residues within 4Å: Chain F: S.3, N.4 Chain G: N.4, L.5, A.8, A.9 Chain H: L.5 Ligands: CVM.56, CVM.78 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain G Hydrogen bonds: F:S.3, G:L.5 Hydrophobic interactions: G:A.8 CVM.68: 8 residues within 4Å: Chain F: E.62 Chain G: A.59, F.60, A.63 Ligands: CVM.59, CVM.60, CVM.76, CVM.77 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:F.60, G:A.63 CVM.69: 5 residues within 4Å: Chain G: A.63, I.66, Y.67 Ligands: CVM.63, CVM.70 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:A.63, G:I.66, G:Y.67 CVM.70: 3 residues within 4Å: Chain G: A.59, E.62 Ligands: CVM.69 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:E.62 CVM.71: 4 residues within 4Å: Chain G: I.66 Chain H: Y.67 Ligands: CVM.72, CVM.80 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:I.66 CVM.72: 7 residues within 4Å: Chain G: I.66, L.69, V.70, L.73 Ligands: CVM.71, CVM.74, CVM.75 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:I.66, G:L.69, G:V.70, G:L.73 CVM.73: 5 residues within 4Å: Chain G: L.73, V.74, A.78 Ligands: CVM.64, CVM.75 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:L.73, G:V.74, G:A.78 CVM.74: 4 residues within 4Å: Chain G: L.69 Chain H: V.70 Ligands: CVM.72, CVM.80 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G Hydrophobic interactions: H:V.70, G:L.69 CVM.75: 3 residues within 4Å: Chain G: F.77 Ligands: CVM.72, CVM.73 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:F.77, G:F.77 CVM.76: 5 residues within 4Å: Chain F: R.51, L.55 Chain G: L.56, F.60 Ligands: CVM.68 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:L.55, G:F.60 CVM.77: 6 residues within 4Å: Chain F: R.51 Chain G: G.52, L.55, L.56, A.59 Ligands: CVM.68 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:L.55, G:A.59 CVM.78: 10 residues within 4Å: Chain G: S.3 Chain H: S.3, N.4, L.5, A.8, A.9, I.12 Chain I: L.5 Ligands: CVM.67, CVM.89 5 PLIP interactions: 3 interactions with chain H, 2 interactions with chain G Hydrophobic interactions: H:I.12 Hydrogen bonds: H:S.3, H:L.5, G:S.3, G:S.3 CVM.79: 3 residues within 4Å: Chain G: E.62 Chain H: F.60, A.63 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:F.60, H:A.63 CVM.80: 5 residues within 4Å: Chain H: A.63, I.66, Y.67 Ligands: CVM.71, CVM.74 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:A.63, H:I.66, H:Y.67 CVM.81: 4 residues within 4Å: Chain H: A.59, E.62, I.66 Ligands: CVM.90 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:E.62, H:I.66 CVM.82: 4 residues within 4Å: Chain H: I.66 Chain I: Y.67 Ligands: CVM.90, CVM.91 1 PLIP interactions: 1 interactions with chain H Hydrophobic interactions: H:I.66 CVM.83: 4 residues within 4Å: Chain H: I.66, L.69, V.70, L.73 4 PLIP interactions: 4 interactions with chain H Hydrophobic interactions: H:I.66, H:L.69, H:V.70, H:L.73 CVM.84: 3 residues within 4Å: Chain H: L.73, V.74, A.78 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:L.73, H:V.74, H:A.78 CVM.85: 4 residues within 4Å: Chain H: L.69 Chain I: Y.67 Ligands: CVM.86, CVM.91 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain I Hydrophobic interactions: H:L.69, I:Y.67 CVM.86: 3 residues within 4Å: Chain H: F.77 Chain I: V.70 Ligands: CVM.85 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain I Hydrophobic interactions: H:F.77, I:V.70 CVM.87: 3 residues within 4Å: Chain G: R.51 Chain H: L.56 Ligands: CVM.88 1 PLIP interactions: 1 interactions with chain H Hydrophobic interactions: H:L.56 CVM.88: 6 residues within 4Å: Chain G: R.51 Chain H: G.52, L.55, L.56, A.59 Ligands: CVM.87 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:L.55, H:A.59 CVM.89: 10 residues within 4Å: Chain H: S.3 Chain I: S.3, N.4, L.5, A.8, A.9, I.12 Chain J: L.5 Ligands: CVM.78, CVM.100 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain H Hydrophobic interactions: I:I.12 Hydrogen bonds: I:L.5, H:S.3 CVM.90: 7 residues within 4Å: Chain H: E.62 Chain I: A.59, A.63, Y.67 Ligands: CVM.81, CVM.82, CVM.98 2 PLIP interactions: 2 interactions with chain I Hydrophobic interactions: I:A.59, I:A.63 CVM.91: 5 residues within 4Å: Chain I: A.63, I.66 Ligands: CVM.82, CVM.85, CVM.92 2 PLIP interactions: 2 interactions with chain I Hydrophobic interactions: I:A.63, I:I.66 CVM.92: 5 residues within 4Å: Chain I: A.59, E.62, I.66 Chain J: F.60 Ligands: CVM.91 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain J Hydrophobic interactions: I:E.62, I:I.66, J:F.60 CVM.93: 5 residues within 4Å: Chain I: I.66 Chain J: Y.67 Ligands: CVM.94, CVM.101, CVM.102 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:I.66 CVM.94: 4 residues within 4Å: Chain I: I.66, L.69, L.73 Ligands: CVM.93 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:I.66, I:L.69, I:L.73 CVM.95: 3 residues within 4Å: Chain I: L.73, V.74, F.77 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:L.73, I:V.74, I:F.77 CVM.96: 3 residues within 4Å: Chain I: L.69 Chain J: V.70 Ligands: CVM.97 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I Hydrophobic interactions: J:V.70, I:L.69 CVM.97: 5 residues within 4Å: Chain I: F.77 Chain J: V.70, A.78 Ligands: CVM.96, CVM.106 3 PLIP interactions: 2 interactions with chain J, 1 interactions with chain I Hydrophobic interactions: J:V.70, J:A.78, I:F.77 CVM.98: 4 residues within 4Å: Chain H: R.51, L.55 Chain I: L.56 Ligands: CVM.90 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain H Hydrophobic interactions: I:L.56, H:L.55 CVM.99: 4 residues within 4Å: Chain H: R.51 Chain I: G.52, L.55, A.59 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:A.59 CVM.100: 10 residues within 4Å: Chain I: S.3, N.4 Chain J: N.4, L.5, A.8, A.9, I.12 Chain K: L.5 Ligands: CVM.89, CVM.111 5 PLIP interactions: 4 interactions with chain J, 1 interactions with chain I Hydrophobic interactions: J:I.12 Hydrogen bonds: J:L.5, I:S.3 Water bridges: J:S.3, J:N.4 CVM.101: 6 residues within 4Å: Chain I: E.62 Chain J: A.59, F.60, A.63 Ligands: CVM.93, CVM.109 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:A.63 CVM.102: 5 residues within 4Å: Chain J: A.63, I.66, Y.67 Ligands: CVM.93, CVM.103 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:A.63, J:I.66, J:Y.67 CVM.103: 4 residues within 4Å: Chain J: A.59, E.62, I.66 Ligands: CVM.102 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:E.62, J:E.62, J:I.66 CVM.104: 4 residues within 4Å: Chain J: I.66 Ligands: CVM.105, CVM.107, CVM.113 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:I.66 CVM.105: 6 residues within 4Å: Chain J: I.66, L.69, V.70 Ligands: CVM.104, CVM.106, CVM.107 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:I.66, J:L.69, J:V.70 CVM.106: 3 residues within 4Å: Chain J: V.74 Ligands: CVM.97, CVM.105 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:V.74 CVM.107: 5 residues within 4Å: Chain J: L.69 Ligands: CVM.104, CVM.105, CVM.108, CVM.113 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:L.69 CVM.108: 4 residues within 4Å: Chain J: L.73, F.77 Ligands: CVM.107, CVM.117 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:L.73, J:F.77, J:F.77 CVM.109: 3 residues within 4Å: Chain I: L.55 Chain J: L.56 Ligands: CVM.101 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I Hydrophobic interactions: J:L.56, I:L.55 CVM.110: 5 residues within 4Å: Chain I: R.51 Chain J: G.52, L.55, L.56, A.59 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:L.55, J:L.56, J:A.59 CVM.111: 8 residues within 4Å: Chain J: S.3 Chain K: S.3, N.4, L.5, A.9 Chain L: L.5 Ligands: CVM.100, CVM.122 4 PLIP interactions: 3 interactions with chain K, 1 interactions with chain J Hydrogen bonds: K:L.5, J:S.3 Water bridges: K:N.4, K:N.4 CVM.112: 6 residues within 4Å: Chain J: E.62 Chain K: A.59, F.60, A.63, Y.67 Ligands: CVM.113 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:A.63 CVM.113: 7 residues within 4Å: Chain K: A.63, I.66, Y.67 Ligands: CVM.104, CVM.107, CVM.112, CVM.116 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:A.63, K:I.66, K:Y.67 CVM.114: 4 residues within 4Å: Chain K: A.59, E.62, I.66 Ligands: CVM.123 2 PLIP interactions: 2 interactions with chain K Hydrophobic interactions: K:E.62, K:I.66 CVM.115: 5 residues within 4Å: Chain K: I.66 Chain L: Y.67 Ligands: CVM.116, CVM.118, CVM.123 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:I.66 CVM.116: 6 residues within 4Å: Chain K: I.66, L.69, V.70, L.73 Ligands: CVM.113, CVM.115 4 PLIP interactions: 4 interactions with chain K Hydrophobic interactions: K:I.66, K:L.69, K:V.70, K:L.73 CVM.117: 5 residues within 4Å: Chain K: L.73, V.74, A.78 Ligands: CVM.108, CVM.119 4 PLIP interactions: 4 interactions with chain K Hydrophobic interactions: K:L.73, K:L.73, K:V.74, K:A.78 CVM.118: 4 residues within 4Å: Chain K: L.69 Ligands: CVM.115, CVM.119, CVM.124 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:L.69 CVM.119: 4 residues within 4Å: Chain K: F.77 Ligands: CVM.117, CVM.118, CVM.128 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:F.77, K:F.77, K:F.77 CVM.120: 3 residues within 4Å: Chain J: L.55 Chain K: L.56 Ligands: CVM.121 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain J Hydrophobic interactions: K:L.56, J:L.55 CVM.121: 5 residues within 4Å: Chain J: R.51 Chain K: G.52, L.55, A.59 Ligands: CVM.120 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:L.55, K:L.55, K:A.59 CVM.122: 9 residues within 4Å: Chain K: S.3, N.4 Chain L: N.4, L.5, A.8, A.9 Chain M: L.5 Ligands: CVM.111, CVM.133 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: L:A.8 Hydrogen bonds: L:L.5, K:S.3 CVM.123: 8 residues within 4Å: Chain K: E.62 Chain L: A.59, F.60, A.63 Ligands: CVM.114, CVM.115, CVM.131, CVM.132 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:F.60, L:A.63 CVM.124: 5 residues within 4Å: Chain L: A.63, I.66, Y.67 Ligands: CVM.118, CVM.125 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:A.63, L:I.66, L:Y.67 CVM.125: 3 residues within 4Å: Chain L: A.59, E.62 Ligands: CVM.124 1 PLIP interactions: 1 interactions with chain L Hydrophobic interactions: L:E.62 CVM.126: 4 residues within 4Å: Chain L: I.66 Chain M: Y.67 Ligands: CVM.127, CVM.135 1 PLIP interactions: 1 interactions with chain L Hydrophobic interactions: L:I.66 CVM.127: 7 residues within 4Å: Chain L: I.66, L.69, V.70, L.73 Ligands: CVM.126, CVM.129, CVM.130 4 PLIP interactions: 4 interactions with chain L Hydrophobic interactions: L:I.66, L:L.69, L:V.70, L:L.73 CVM.128: 5 residues within 4Å: Chain L: L.73, V.74, A.78 Ligands: CVM.119, CVM.130 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:L.73, L:V.74, L:A.78 CVM.129: 4 residues within 4Å: Chain L: L.69 Chain M: V.70 Ligands: CVM.127, CVM.135 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain M Hydrophobic interactions: L:L.69, M:V.70 CVM.130: 3 residues within 4Å: Chain L: F.77 Ligands: CVM.127, CVM.128 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:F.77, L:F.77 CVM.131: 5 residues within 4Å: Chain K: R.51, L.55 Chain L: L.56, F.60 Ligands: CVM.123 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: L:F.60, K:L.55 CVM.132: 6 residues within 4Å: Chain K: R.51 Chain L: G.52, L.55, L.56, A.59 Ligands: CVM.123 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:L.55, L:A.59 CVM.133: 10 residues within 4Å: Chain L: S.3 Chain M: S.3, N.4, L.5, A.8, A.9, I.12 Chain N: L.5 Ligands: CVM.122, CVM.144 5 PLIP interactions: 3 interactions with chain M, 2 interactions with chain L Hydrophobic interactions: M:I.12 Hydrogen bonds: M:S.3, M:L.5, L:S.3, L:S.3 CVM.134: 3 residues within 4Å: Chain L: E.62 Chain M: F.60, A.63 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:F.60, M:A.63 CVM.135: 5 residues within 4Å: Chain M: A.63, I.66, Y.67 Ligands: CVM.126, CVM.129 3 PLIP interactions: 3 interactions with chain M Hydrophobic interactions: M:A.63, M:I.66, M:Y.67 CVM.136: 4 residues within 4Å: Chain M: A.59, E.62, I.66 Ligands: CVM.145 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:E.62, M:I.66 CVM.137: 4 residues within 4Å: Chain M: I.66 Chain N: Y.67 Ligands: CVM.145, CVM.146 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:I.66 CVM.138: 4 residues within 4Å: Chain M: I.66, L.69, V.70, L.73 4 PLIP interactions: 4 interactions with chain M Hydrophobic interactions: M:I.66, M:L.69, M:V.70, M:L.73 CVM.139: 3 residues within 4Å: Chain M: L.73, V.74, A.78 3 PLIP interactions: 3 interactions with chain M Hydrophobic interactions: M:L.73, M:V.74, M:A.78 CVM.140: 4 residues within 4Å: Chain M: L.69 Chain N: Y.67 Ligands: CVM.141, CVM.146 2 PLIP interactions: 1 interactions with chain M, 1 interactions with chain N Hydrophobic interactions: M:L.69, N:Y.67 CVM.141: 3 residues within 4Å: Chain M: F.77 Chain N: V.70 Ligands: CVM.140 2 PLIP interactions: 1 interactions with chain M, 1 interactions with chain N Hydrophobic interactions: M:F.77, N:V.70 CVM.142: 3 residues within 4Å: Chain L: R.51 Chain M: L.56 Ligands: CVM.143 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:L.56 CVM.143: 6 residues within 4Å: Chain L: R.51 Chain M: G.52, L.55, L.56, A.59 Ligands: CVM.142 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:L.55, M:A.59 CVM.144: 10 residues within 4Å: Chain M: S.3 Chain N: S.3, N.4, L.5, A.8, A.9, I.12 Chain O: L.5 Ligands: CVM.133, CVM.155 3 PLIP interactions: 2 interactions with chain N, 1 interactions with chain M Hydrophobic interactions: N:I.12 Hydrogen bonds: N:L.5, M:S.3 CVM.145: 7 residues within 4Å: Chain M: E.62 Chain N: A.59, A.63, Y.67 Ligands: CVM.136, CVM.137, CVM.153 2 PLIP interactions: 2 interactions with chain N Hydrophobic interactions: N:A.59, N:A.63 CVM.146: 5 residues within 4Å: Chain N: A.63, I.66 Ligands: CVM.137, CVM.140, CVM.147 2 PLIP interactions: 2 interactions with chain N Hydrophobic interactions: N:A.63, N:I.66 CVM.147: 5 residues within 4Å: Chain N: A.59, E.62, I.66 Chain O: F.60 Ligands: CVM.146 3 PLIP interactions: 1 interactions with chain O, 2 interactions with chain N Hydrophobic interactions: O:F.60, N:E.62, N:I.66 CVM.148: 5 residues within 4Å: Chain N: I.66 Chain O: Y.67 Ligands: CVM.149, CVM.156, CVM.157 1 PLIP interactions: 1 interactions with chain N Hydrophobic interactions: N:I.66 CVM.149: 4 residues within 4Å: Chain N: I.66, L.69, L.73 Ligands: CVM.148 3 PLIP interactions: 3 interactions with chain N Hydrophobic interactions: N:I.66, N:L.69, N:L.73 CVM.150: 3 residues within 4Å: Chain N: L.73, V.74, F.77 3 PLIP interactions: 3 interactions with chain N Hydrophobic interactions: N:L.73, N:V.74, N:F.77 CVM.151: 3 residues within 4Å: Chain N: L.69 Chain O: V.70 Ligands: CVM.152 2 PLIP interactions: 1 interactions with chain O, 1 interactions with chain N Hydrophobic interactions: O:V.70, N:L.69 CVM.152: 5 residues within 4Å: Chain N: F.77 Chain O: V.70, A.78 Ligands: CVM.151, CVM.161 3 PLIP interactions: 2 interactions with chain O, 1 interactions with chain N Hydrophobic interactions: O:V.70, O:A.78, N:F.77 CVM.153: 4 residues within 4Å: Chain M: R.51, L.55 Chain N: L.56 Ligands: CVM.145 2 PLIP interactions: 1 interactions with chain M, 1 interactions with chain N Hydrophobic interactions: M:L.55, N:L.56 CVM.154: 4 residues within 4Å: Chain M: R.51 Chain N: G.52, L.55, A.59 1 PLIP interactions: 1 interactions with chain N Hydrophobic interactions: N:A.59 CVM.155: 10 residues within 4Å: Chain A: L.5 Chain N: S.3, N.4 Chain O: N.4, L.5, A.8, A.9, I.12 Ligands: CVM.1, CVM.144 5 PLIP interactions: 4 interactions with chain O, 1 interactions with chain N Hydrophobic interactions: O:I.12 Hydrogen bonds: O:L.5, N:S.3 Water bridges: O:S.3, O:N.4 CVM.156: 6 residues within 4Å: Chain N: E.62 Chain O: A.59, F.60, A.63 Ligands: CVM.148, CVM.164 1 PLIP interactions: 1 interactions with chain O Hydrophobic interactions: O:A.63 CVM.157: 5 residues within 4Å: Chain O: A.63, I.66, Y.67 Ligands: CVM.148, CVM.158 3 PLIP interactions: 3 interactions with chain O Hydrophobic interactions: O:A.63, O:I.66, O:Y.67 CVM.158: 4 residues within 4Å: Chain O: A.59, E.62, I.66 Ligands: CVM.157 3 PLIP interactions: 3 interactions with chain O Hydrophobic interactions: O:E.62, O:E.62, O:I.66 CVM.159: 4 residues within 4Å: Chain O: I.66 Ligands: CVM.3, CVM.160, CVM.162 1 PLIP interactions: 1 interactions with chain O Hydrophobic interactions: O:I.66 CVM.160: 6 residues within 4Å: Chain O: I.66, L.69, V.70 Ligands: CVM.159, CVM.161, CVM.162 3 PLIP interactions: 3 interactions with chain O Hydrophobic interactions: O:I.66, O:L.69, O:V.70 CVM.161: 3 residues within 4Å: Chain O: V.74 Ligands: CVM.152, CVM.160 1 PLIP interactions: 1 interactions with chain O Hydrophobic interactions: O:V.74 CVM.162: 5 residues within 4Å: Chain O: L.69 Ligands: CVM.3, CVM.159, CVM.160, CVM.163 1 PLIP interactions: 1 interactions with chain O Hydrophobic interactions: O:L.69 CVM.163: 4 residues within 4Å: Chain O: L.73, F.77 Ligands: CVM.7, CVM.162 3 PLIP interactions: 3 interactions with chain O Hydrophobic interactions: O:L.73, O:F.77, O:F.77 CVM.164: 3 residues within 4Å: Chain N: L.55 Chain O: L.56 Ligands: CVM.156 2 PLIP interactions: 1 interactions with chain O, 1 interactions with chain N Hydrophobic interactions: O:L.56, N:L.55 CVM.165: 5 residues within 4Å: Chain N: R.51 Chain O: G.52, L.55, L.56, A.59 3 PLIP interactions: 3 interactions with chain O Hydrophobic interactions: O:L.55, O:L.56, O:A.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pogoryelov, D. et al., Microscopic Rotary Mechanism of Ion Translocation in the Fo Complex of ATP Synthases. Nat.Chem.Biol. (2010)

Release Date

2010-10-27

Peptides

ATP SYNTHASE C CHAIN: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

K
A

L
B

M
C

N
D

O
E

Membrane

We predict this structure to be a membrane protein.
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ATP SYNTHASE C CHAIN

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