SMTL ID : 2xre.2 (3 other biounits)

Detection of cobalt in previously unassigned human SENP1 structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: W.51, V.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.51 GOL.2: 6 residues within 4Å: Chain A: F.6, P.7, D.198, C.199, F.216, R.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.219, A:R.219 GOL.3: 3 residues within 4Å: Chain A: Y.92, Q.93, Q.155 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.93 GOL.4: 4 residues within 4Å: Chain A: K.88, T.89, A.90, G.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.89, A:A.90 GOL.5: 2 residues within 4Å: Chain A: A.33, F.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.32, A:F.34 GOL.6: 3 residues within 4Å: Chain A: Q.44, N.47, N.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.44, A:N.47, A:N.50 GOL.8: 7 residues within 4Å: Chain A: E.8 Chain B: M.63, E.66, R.67, R.227, K.228, L.229 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:M.63, B:E.66, B:L.229, B:L.229, A:E.8, A:E.8 GOL.9: 4 residues within 4Å: Chain B: G.91, Y.92, Q.93, Q.155 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.92, B:Q.93, B:Q.93, B:Q.155, B:Q.155 GOL.10: 3 residues within 4Å: Chain B: K.129, F.173, K.175 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.129, B:K.175 GOL.11: 2 residues within 4Å: Chain B: K.202, R.204 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.202, B:R.204, B:R.204

1 x CO: COBALT (II) ION(Non-covalent)

CO.7: 4 residues within 4Å: Chain A: E.16, H.226 Chain B: E.16, H.226 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.16, A:E.16, A:H.226, B:E.16, B:H.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rimsa, V. et al., The Role of Co2+ in the Crystallization of Human Senp1 and Comments on the Limitations of Automated Refinement Protocols. Acta Crystallogr.,Sect.F (2011)

Release Date

2010-10-06

Peptides

SENTRIN-SPECIFIC PROTEASE 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

SENTRIN-SPECIFIC PROTEASE 1

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