SMTL ID : 2xrg.1

Crystal structure of Autotaxin (ENPP2) in complex with the HA155 boronic acid inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: L.220, S.224, P.522, N.524, L.745, H.831 No protein-ligand interaction detected (PLIP)

1 x SWH: {4-[(4-{(Z)-[3-(4-FLUOROBENZYL)-2,4-DIOXO-1,3-THIAZOLIDIN-5-YLIDENE]METHYL}PHENOXY)METHYL]PHENYL}(TRIHYDROXY)BORATE(1-)(Covalent)

SWH.2: 14 residues within 4Å: Chain A: D.171, T.209, F.210, L.213, N.230, L.243, F.273, F.274, Y.306, D.311, H.359, H.474 Ligands: ZN.3, ZN.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.209, A:F.210, A:F.210, A:L.213, A:L.243, A:Y.306 Hydrogen bonds: A:T.209, A:N.230

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: D.311, H.315, H.474 Ligands: SWH.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.311, A:H.315, A:H.474 ZN.4: 5 residues within 4Å: Chain A: D.171, T.209, D.358, H.359 Ligands: SWH.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.171, A:T.209, A:D.358, A:H.359

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain A: D.739, N.741, D.743, L.745, D.747 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.739, A:D.743, A:L.745, A:D.747

5 x IOD: IODIDE ION(Non-functional Binders)

IOD.6: 3 residues within 4Å: Chain A: S.231, S.240, R.393 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: S.846 Ligand excluded by PLIP IOD.8: 4 residues within 4Å: Chain A: P.787, L.788, R.843, E.847 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: R.594, S.636, D.782 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain A: N.230 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hausmann, J. et al., Structural Basis of Substrate Discrimination and Integrin Binding by Autotaxin. Nat.Struct.Mol.Biol. (2011)

Release Date

2011-01-19

Peptides

ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 2