- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 8 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 4 x SRM: SIROHEME(Non-covalent)(Covalent)
SRM.3: 33 residues within 4Å:- Chain A: C.177, L.178, R.182, C.183, E.184, W.185, N.223, G.224, C.225, N.262, N.311
- Chain B: H.44, I.46, L.52, H.54, R.66, R.94, T.96, T.97, R.98, N.100, E.102, G.134, T.135, G.136, T.140, R.183, K.293, V.294, S.295, R.297, R.341
- Ligands: SF4.2
38 PLIP interactions:28 interactions with chain B, 9 interactions with chain A, 1 Ligand-Water interactions- Hydrophobic interactions: B:L.52, B:R.98, B:V.294, A:L.178, A:W.185, A:N.223, A:N.311
- Hydrogen bonds: B:T.97, B:N.100, B:G.136, B:T.140, B:C.198, B:V.294, B:S.295, A:L.178, A:N.262
- Water bridges: B:H.54, B:G.134, B:Q.181, B:R.183, B:R.297, B:R.341, A:R.182, A:R.231
- Salt bridges: B:H.44, B:H.54, B:R.66, B:R.66, B:R.94, B:R.98, B:R.183, B:R.183, B:R.297, B:R.297, B:R.341, B:R.341
- Metal complexes: A:C.225, H2O.12
SRM.6: 34 residues within 4Å:- Chain A: I.81, R.83, R.101, G.134, A.135, T.136, G.137, D.138, Y.212, K.213, K.215, K.217, R.231, K.332, A.333, I.335, R.376, R.378
- Chain B: R.71, H.144, T.145, Q.146, H.150, C.151, H.152, N.191, M.192, C.193, G.194, T.271
- Chain C: G.103, C.104
- Ligands: SF4.5, SO3.7
37 PLIP interactions:7 interactions with chain B, 29 interactions with chain A, 1 interactions with chain C,- Hydrophobic interactions: B:Q.146, B:N.191, A:A.135
- Hydrogen bonds: B:Q.146, A:G.134, A:A.135, A:T.136, A:G.137, A:D.138, A:Y.212, A:A.333, C:C.104
- Salt bridges: B:R.71, B:H.150, B:H.152, A:R.83, A:R.83, A:R.101, A:K.213, A:K.213, A:K.215, A:K.215, A:K.217, A:R.231, A:K.332, A:R.376, A:R.378, A:R.378
- Metal complexes: B:C.193
- Water bridges: A:R.83, A:R.83, A:R.101, A:N.131, A:I.335, A:R.378
- pi-Cation interactions: A:K.213, A:K.215
SRM.10: 32 residues within 4Å:- Chain D: C.177, L.178, R.182, C.183, E.184, W.185, N.223, G.224, C.225, N.262, N.311
- Chain E: H.44, L.52, H.54, R.66, R.94, T.96, T.97, R.98, N.100, E.102, G.134, T.135, G.136, T.140, R.183, K.293, V.294, S.295, R.297, R.341
- Ligands: SF4.9
37 PLIP interactions:28 interactions with chain E, 8 interactions with chain D, 1 Ligand-Water interactions- Hydrophobic interactions: E:L.52, E:R.98, E:V.294, D:W.185, D:N.223, D:N.311
- Hydrogen bonds: E:T.97, E:N.100, E:N.100, E:G.136, E:T.140, E:C.198, E:V.294, E:S.295, D:L.178, D:N.262
- Water bridges: E:H.54, E:R.98, E:G.134, E:R.183, E:R.341, D:R.182, D:R.231
- Salt bridges: E:H.44, E:H.54, E:R.66, E:R.66, E:R.94, E:R.98, E:R.183, E:R.183, E:R.297, E:R.297, E:R.341, E:R.341
- Metal complexes: D:C.225, H2O.32
SRM.13: 34 residues within 4Å:- Chain D: I.81, R.83, R.101, G.134, A.135, T.136, G.137, D.138, Y.212, K.213, K.215, K.217, R.231, K.332, A.333, I.335, R.376, R.378
- Chain E: R.71, H.144, T.145, Q.146, H.150, C.151, H.152, N.191, M.192, C.193, G.194, T.271
- Chain F: G.103, C.104
- Ligands: SF4.12, SO3.14
35 PLIP interactions:28 interactions with chain D, 6 interactions with chain E, 1 interactions with chain F,- Hydrogen bonds: D:G.134, D:A.135, D:T.136, D:G.137, D:D.138, D:Y.212, D:A.333, F:C.104
- Water bridges: D:R.83, D:R.83, D:N.131, D:I.335, D:L.336, D:R.378, E:Q.146
- Salt bridges: D:R.83, D:R.83, D:R.101, D:K.213, D:K.213, D:K.215, D:K.215, D:K.217, D:R.231, D:K.332, D:R.376, D:R.378, D:R.378, E:R.71, E:H.150, E:H.152
- pi-Cation interactions: D:K.213, D:K.215
- Hydrophobic interactions: E:N.191
- Metal complexes: E:C.193
- 2 x SO3: SULFITE ION(Non-covalent)
SO3.7: 6 residues within 4Å:- Chain A: R.101, R.172, K.213, K.215
- Chain C: C.104
- Ligands: SRM.6
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:R.101, A:R.101, A:T.136, A:R.172, A:R.172, A:K.213, A:K.215
- Water bridges: C:C.104
SO3.14: 6 residues within 4Å:- Chain D: R.101, R.172, K.213, K.215
- Chain F: C.104
- Ligands: SRM.13
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:R.101, D:R.101, D:T.136, D:R.172, D:R.172, D:K.213, D:K.213, D:K.215
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oliveira, T.F. et al., Structural Insights Into Dissimilatory Sulfite Reductases: Structure of Desulforubidin from Desulfomicrobium Norvegicum. Front.Microbiol. (2011)
- Release Date
- 2011-08-24
- Peptides
- SULFITE REDUCTASE ALPHA SUBUNIT: AD
SULFITE REDUCTASE BETA SUBUNIT: BE
SULFUR RELAY PROTEIN, TUSE/DSRC/DSVC FAMILY: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 8 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 4 x SRM: SIROHEME(Non-covalent)(Covalent)
- 2 x SO3: SULFITE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oliveira, T.F. et al., Structural Insights Into Dissimilatory Sulfite Reductases: Structure of Desulforubidin from Desulfomicrobium Norvegicum. Front.Microbiol. (2011)
- Release Date
- 2011-08-24
- Peptides
- SULFITE REDUCTASE ALPHA SUBUNIT: AD
SULFITE REDUCTASE BETA SUBUNIT: BE
SULFUR RELAY PROTEIN, TUSE/DSRC/DSVC FAMILY: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F