SMTL ID : 2xsz.1

The dodecameric human RuvBL1:RuvBL2 complex with truncated domains II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-3-3-mer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: S.31, H.32, H.34, G.52, L.53, V.54, Q.56, P.85, P.86, G.87, T.88, G.89, K.90, T.91, A.92, D.213, Y.277, I.285, L.314, R.315 Chain F: D.267 18 PLIP interactions: 2 interactions with chain F, 16 interactions with chain A Hydrogen bonds: F:D.267, F:D.267, A:S.31, A:H.32, A:V.54, A:G.87, A:T.88, A:G.89, A:K.90, A:T.91, A:T.91, A:T.91, A:A.92, A:Y.277, A:Y.277 Salt bridges: A:H.32, A:K.90, A:R.315 ATP.2: 22 residues within 4Å: Chain B: S.31, H.32, H.34, G.52, L.53, V.54, Q.56, P.85, P.86, G.87, T.88, G.89, K.90, T.91, A.92, D.213, Y.277, I.285, R.289, L.314, R.315 Chain D: D.267 18 PLIP interactions: 16 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:S.31, B:H.32, B:V.54, B:G.87, B:T.88, B:G.89, B:K.90, B:T.91, B:T.91, B:T.91, B:A.92, B:Y.277, B:Y.277, D:D.267, D:D.267 Salt bridges: B:H.32, B:K.90, B:R.315 ATP.3: 21 residues within 4Å: Chain C: S.31, H.32, H.34, G.52, L.53, V.54, Q.56, P.85, P.86, G.87, T.88, G.89, K.90, T.91, A.92, D.213, Y.277, I.285, L.314, R.315 Chain E: D.267 18 PLIP interactions: 16 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:S.31, C:H.32, C:V.54, C:G.87, C:T.88, C:G.89, C:K.90, C:T.91, C:T.91, C:T.91, C:A.92, C:Y.277, C:Y.277, E:D.267, E:D.267 Salt bridges: C:H.32, C:K.90, C:R.315 ATP.4: 23 residues within 4Å: Chain A: D.267 Chain D: A.39, H.40, H.42, I.43, G.60, M.61, V.62, Q.64, Q.93, P.94, G.95, T.96, G.97, K.98, T.99, A.100, D.214, Y.277, I.285, R.289, L.314, I.318 18 PLIP interactions: 16 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:H.40, D:V.62, D:G.95, D:T.96, D:G.97, D:K.98, D:T.99, D:T.99, D:T.99, D:A.100, D:D.214, D:Y.277, D:Y.277, A:D.267, A:D.267 Salt bridges: D:H.40, D:K.98, D:K.98 ATP.5: 23 residues within 4Å: Chain B: D.267 Chain E: A.39, H.40, H.42, I.43, G.60, M.61, V.62, Q.64, Q.93, P.94, G.95, T.96, G.97, K.98, T.99, A.100, D.214, Y.277, I.285, R.289, L.314, I.318 18 PLIP interactions: 2 interactions with chain B, 16 interactions with chain E Hydrogen bonds: B:D.267, B:D.267, E:H.40, E:V.62, E:G.95, E:T.96, E:G.97, E:K.98, E:T.99, E:T.99, E:T.99, E:A.100, E:D.214, E:Y.277, E:Y.277 Salt bridges: E:H.40, E:K.98, E:K.98 ATP.6: 23 residues within 4Å: Chain C: D.267 Chain F: A.39, H.40, H.42, I.43, G.60, M.61, V.62, Q.64, Q.93, P.94, G.95, T.96, G.97, K.98, T.99, A.100, D.214, Y.277, I.285, R.289, L.314, I.318 16 PLIP interactions: 15 interactions with chain F, 1 interactions with chain C Hydrogen bonds: F:H.40, F:V.62, F:G.95, F:T.96, F:G.97, F:K.98, F:T.99, F:T.99, F:T.99, F:A.100, F:Y.277, F:Y.277, C:D.267 Salt bridges: F:H.40, F:K.98, F:K.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorynia, S. et al., Structural and Functional Insights Into a Dodecameric Molecular Machine - the Ruvbl1/Ruvbl2 Complex. J.Struct.Biol. (2011)

Release Date

2011-10-05

Peptides

RUVB-LIKE 1: ABC
RUVB-LIKE 2: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

RUVB-LIKE 1

RUVB-LIKE 2