SMTL ID : 2xtu.1

Structure of E.coli rhomboid protease GlpG active site mutant, S201T in trigonal crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

18 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.1: 2 residues within 4Å: Chain A: A.173, F.176 Ligand excluded by PLIP BNG.2: 2 residues within 4Å: Chain A: F.43, F.45 Ligand excluded by PLIP BNG.3: 9 residues within 4Å: Chain A: M.10, W.46, F.49, T.50, A.52, T.88, A.92 Ligands: BNG.4, BNG.12 Ligand excluded by PLIP BNG.4: 5 residues within 4Å: Chain A: V.9, M.10, A.13 Ligands: BNG.3, BNG.12 Ligand excluded by PLIP BNG.5: 4 residues within 4Å: Chain A: I.147, W.151, F.152 Ligands: BNG.11 Ligand excluded by PLIP BNG.6: 4 residues within 4Å: Chain A: M.118, W.122, L.135, I.140 Ligand excluded by PLIP BNG.7: 5 residues within 4Å: Chain A: V.16, A.20, L.24, W.32 Ligands: BNG.12 Ligand excluded by PLIP BNG.8: 11 residues within 4Å: Chain A: E.1, R.2, A.3, L.66, W.67, W.69, Y.70, G.73, A.74 Ligands: BNG.13, BNG.14 Ligand excluded by PLIP BNG.9: 3 residues within 4Å: Chain A: L.31, W.32, R.47 Ligand excluded by PLIP BNG.10: 3 residues within 4Å: Chain A: P.39, T.40, K.42 Ligand excluded by PLIP BNG.11: 3 residues within 4Å: Chain A: I.147, W.151 Ligands: BNG.5 Ligand excluded by PLIP BNG.12: 9 residues within 4Å: Chain A: A.13, V.16, V.17, L.33, W.46, L.53 Ligands: BNG.3, BNG.4, BNG.7 Ligand excluded by PLIP BNG.13: 4 residues within 4Å: Chain A: F.63, Y.70, Q.136 Ligands: BNG.8 Ligand excluded by PLIP BNG.14: 8 residues within 4Å: Chain A: H.60, F.63, F.142, I.145, W.146, F.155, M.157 Ligands: BNG.8 Ligand excluded by PLIP BNG.15: 3 residues within 4Å: Chain A: G.125, P.129, Y.134 Ligand excluded by PLIP BNG.16: 3 residues within 4Å: Chain A: P.5, G.80, S.81 Ligand excluded by PLIP BNG.17: 8 residues within 4Å: Chain A: F.102, W.151, A.160, N.161, G.162, I.165, A.166, A.169 Ligand excluded by PLIP BNG.18: 5 residues within 4Å: Chain A: R.2, A.3, G.4, P.5, W.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinothkumar, K.R., Structure of Rhomboid Protease in a Lipid Environment. J.Mol.Biol. (2011)

Release Date

2011-02-02

Peptides

RHOMBOID PROTEASE GLPG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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RHOMBOID PROTEASE GLPG