SMTL ID : 2xue.2 (1 other biounit)

CRYSTAL STRUCTURE OF JMJD3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.435, C.438, C.462, C.465 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.435, A:C.438, A:C.462, A:C.465

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: E.430, Y.433, L.446, V.448, V.460 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.433

1 x FE: FE (III) ION(Non-covalent)

FE.3: 4 residues within 4Å: Chain A: H.250, E.252, H.330 Ligands: AKG.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.250, A:E.252, A:H.330, H2O.100

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.4: 14 residues within 4Å: Chain A: F.188, Y.239, K.241, T.247, H.250, E.252, S.258, N.260, W.270, H.330, V.332, N.340, A.342 Ligands: FE.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.270, A:V.332 Hydrogen bonds: A:S.258, A:N.260 Water bridges: A:T.247 Salt bridges: A:K.241, A:H.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kruidenier, L. et al., A Selective Jumonji H3K27 Demethylase Inhibitor Modulates the Proinflammatory Macrophage Response. Nature (2012)

Release Date

2011-12-28

Peptides

LYSINE-SPECIFIC DEMETHYLASE 6B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

LYSINE-SPECIFIC DEMETHYLASE 6B

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