SMTL ID : 2xuu.1

Crystal structure of a DAP-kinase 1 mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: L.19, G.20, S.21, G.22, V.27, A.40, K.42, L.93, E.94, V.96, E.143, I.160, D.161, G.163 Ligands: MG.5 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:E.94, A:V.96, A:E.143, A:D.161, A:G.163 Water bridges: A:Q.23, A:Q.23, A:K.42, A:K.42, A:E.100, A:N.144, A:D.161, A:L.164 Salt bridges: A:K.42, A:K.42

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.47, K.50, S.57, R.58 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.58 Water bridges: A:R.47, A:R.47, A:R.48, A:E.59 Salt bridges: A:R.47, A:K.50 SO4.3: 1 residues within 4Å: Chain A: R.47 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.47 SO4.4: 3 residues within 4Å: Chain A: A.97, R.150, N.151 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.151, A:N.151 Water bridges: A:A.97, A:A.97, A:R.150, A:R.150 Salt bridges: A:R.150

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain A: E.143, D.161 Ligands: ADP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.161, H2O.9, H2O.9, H2O.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Temmerman, K. et al., A Pef/Y Substrate Recognition and Signature Motif Plays a Critical Role in Dapk-Related Kinase Activity. Chem.Biol. (2014)

Release Date

2011-11-02

Peptides

DEATH-ASSOCIATED PROTEIN KINASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DEATH-ASSOCIATED PROTEIN KINASE 1