SMTL ID : 2xvk.1

crystal structure of alpha-xylosidase (GH31) from Cellvibrio japonicus in complex with 5-fluoro-alpha-D-xylopyranosyl fluoride

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: N.503, H.882 Ligands: CL.2, CL.3, CL.4, NI.5 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: N.503, H.882 Ligands: CL.1, CL.4, NI.5 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain A: Q.881, H.882, E.885 Ligands: CL.1, CL.4, NI.5 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: H.882, E.885 Ligands: CL.1, CL.2, CL.3, NI.5 Ligand excluded by PLIP

1 x NI: NICKEL (II) ION(Non-covalent)

NI.5: 7 residues within 4Å: Chain A: N.503, H.882, E.885 Ligands: CL.1, CL.2, CL.3, CL.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.882

1 x FFX: (2R,3S,5R,6S)-2,6-DIFLUOROOXANE-3,4,5-TRIOL(Post Translational Modification)

FFX.6: 11 residues within 4Å: Chain A: E.442, D.470, W.471, W.511, W.580, D.582, R.642, W.656, D.659, F.692, H.740 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.642, A:R.642, A:D.659, A:H.740

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larsbrink, J. et al., Structural and Enzymatic Characterisation of a Glycoside Hydrolase Family 31 Alpha-Xylosidase from Cellvibrio Japonicus Involved in Xyloglucan Saccharification. Biochem.J. (2011)

Release Date

2011-04-13

Peptides

ALPHA-XYLOSIDASE, PUTATIVE, XYL31A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ALPHA-XYLOSIDASE, PUTATIVE, XYL31A

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