SMTL ID : 2xvv.1

Human serum albumin complexed with dansyl-L-asparagine and myristic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

6 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 8 residues within 4Å: Chain A: R.117, M.123, Y.138, L.154, F.157, A.158, Y.161, R.186 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.138, A:Y.138, A:Y.138, A:F.157, A:A.158, A:Y.161, A:Y.161 Salt bridges: A:R.117, A:R.186 MYR.2: 8 residues within 4Å: Chain A: L.66, Y.150, L.251, A.254, R.257, L.283, L.284, S.287 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.66, A:A.254, A:L.283, A:L.284 Hydrogen bonds: A:Y.150, A:S.287 Water bridges: A:R.257, A:R.257 Salt bridges: A:R.257 MYR.3: 9 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, I.388, L.430, M.446, L.453, R.485 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.384, A:I.388 Hydrogen bonds: A:S.342, A:S.342 Salt bridges: A:R.348, A:R.485 MYR.4: 7 residues within 4Å: Chain A: L.387, Y.411, L.430, L.457, R.485, F.488, S.489 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:L.430, A:L.457, A:F.488, A:F.488 Hydrogen bonds: A:Y.411, A:Y.411 Water bridges: A:K.414 Salt bridges: A:R.410, A:K.414 MYR.5: 11 residues within 4Å: Chain A: Y.401, N.405, F.507, K.525, L.529, L.532, V.547, M.548, F.551, S.579, Q.580 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.507, A:F.507, A:K.525, A:L.529, A:L.532, A:V.547, A:M.548, A:F.551, A:F.551, A:Q.580 Hydrogen bonds: A:Y.401, A:N.405 Salt bridges: A:K.525 MYR.6: 7 residues within 4Å: Chain A: R.209, A.210, A.213, D.324, L.327, S.480, V.482 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.210, A:L.327 Hydrogen bonds: A:S.480 Salt bridges: A:K.351

2 x 9DN: DANSYL-L-ASPARAGINE(Non-covalent)

9DN.7: 11 residues within 4Å: Chain A: K.199, W.214, R.218, L.219, R.222, L.238, R.257, L.260, S.287, A.291, E.292 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.219, A:L.238, A:A.291 Hydrogen bonds: A:K.199, A:K.199, A:R.222 Water bridges: A:R.218, A:R.218 Salt bridges: A:K.199, A:R.222 9DN.8: 10 residues within 4Å: Chain A: L.115, I.142, H.146, L.154, F.157, Y.161, L.185, R.186, G.189, K.190 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.186, A:K.190 Hydrogen bonds: A:L.115 Salt bridges: A:K.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ryan, A.J. et al., Structural Basis of Binding of Fluorescent, Site-Specific Dansylated Amino Acids to Human Serum Albumin. J.Struct.Biol. (2011)

Release Date

2010-11-10

Peptides

SERUM ALBUMIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERUM ALBUMIN

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