SMTL ID : 2xvw.1

Human serum albumin complexed with dansyl-L-arginine and myristic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

6 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 7 residues within 4Å: Chain A: R.117, M.123, Y.138, L.139, A.158, Y.161, F.165 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.138, A:Y.161, A:Y.161, A:Y.161, A:F.165 Salt bridges: A:R.117, A:R.186 MYR.2: 9 residues within 4Å: Chain A: L.14, L.66, Y.150, L.251, A.254, R.257, L.283, L.284, S.287 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.14, A:L.66, A:L.251, A:A.254, A:L.284 Hydrogen bonds: A:Y.150, A:S.287 Salt bridges: A:R.257 MYR.3: 7 residues within 4Å: Chain A: S.342, V.344, R.348, L.387, I.388, L.453, R.485 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.387, A:I.388 Hydrogen bonds: A:S.342, A:S.342 Salt bridges: A:R.348, A:R.485 MYR.4: 7 residues within 4Å: Chain A: L.387, R.410, Y.411, L.430, L.460, F.488, S.489 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:L.430, A:L.460, A:L.460, A:F.488 Hydrogen bonds: A:Y.411, A:Y.411 Salt bridges: A:R.410, A:K.414 MYR.5: 9 residues within 4Å: Chain A: Y.401, N.405, F.507, K.525, A.528, V.547, M.548, F.551, S.579 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.507, A:K.525, A:A.528, A:V.547, A:M.548, A:F.551, A:F.551 Hydrogen bonds: A:Y.401 MYR.6: 5 residues within 4Å: Chain A: R.209, L.327, L.331, A.350, S.480 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.327, A:L.331, A:A.350 Hydrogen bonds: A:S.480, A:S.480

2 x 9NR: DANSYL-L-ARGININE(Non-covalent)

9NR.7: 15 residues within 4Å: Chain A: E.153, S.192, Q.196, K.199, W.214, R.218, L.219, R.222, L.238, R.257, L.260, S.287, I.290, A.291, E.292 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.219, A:L.238, A:I.290, A:A.291 Hydrogen bonds: A:S.192, A:K.199, A:R.222, A:A.291 Water bridges: A:R.218, A:R.257 Salt bridges: A:E.153, A:K.199, A:R.218, A:R.222, A:E.292 9NR.8: 10 residues within 4Å: Chain A: I.142, H.146, F.149, L.154, F.157, Y.161, L.185, R.186, G.189, K.190 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.190 Water bridges: A:R.114 Salt bridges: A:R.186, A:K.190 pi-Cation interactions: A:H.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ryan, A.J. et al., Structural Basis of Binding of Fluorescent, Site-Specific Dansylated Amino Acids to Human Serum Albumin. J.Struct.Biol. (2011)

Release Date

2010-11-10

Peptides

SERUM ALBUMIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERUM ALBUMIN

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