SMTL ID : 2xwh.1

HCV-J6 NS5B polymerase structure at 1.8 Angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

4 x 15P: POLYETHYLENE GLYCOL (N=34)(Non-functional Binders)

15P.1: 7 residues within 4Å: Chain A: R.81, L.82, L.83, T.84, K.120, W.123, M.173 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.81 Water bridges: A:L.82, A:K.120 15P.2: 6 residues within 4Å: Chain A: E.237, S.238, R.241, E.247, T.251, H.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.238, A:R.241, A:R.241 15P.6: 3 residues within 4Å: Chain A: R.355, E.357, L.362 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.355, A:R.355 Water bridges: A:E.357, A:E.357 15P.7: 6 residues within 4Å: Chain A: L.205, W.208, L.360, E.361, V.372, Y.382 5 PLIP interactions: 5 interactions with chain A Water bridges: A:W.208, A:L.360, A:E.361, A:Y.382, A:Y.382

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 5 residues within 4Å: Chain A: W.6, A.9, S.46, A.49, K.50 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.50, A:K.50 PEG.4: 3 residues within 4Å: Chain A: A.97, Y.162, R.168 No protein-ligand interaction detected (PLIP) PEG.5: 2 residues within 4Å: Chain A: S.121, D.125 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.101, A:H.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmitt, M. et al., A Comprehensive Structure-Function Comparison of Hepatitis C Virus Strains Jfh1 and J6 Polymerases Reveals a Key Residue Stimulating Replication in Cell Culture Across Genotypes. J.Virol. (2011)

Release Date

2011-01-12

Peptides

RNA DEPENDENT RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA DEPENDENT RNA POLYMERASE