SMTL ID : 2xwm.1

Crystal structure of IspD from Mycobacterium smegmatis in complex with CMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.1: 14 residues within 4Å: Chain A: P.8, A.9, A.10, G.11, K.22, G.76, V.77, D.78, R.79, S.82, D.100, A.101, A.102, K.204 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:A.10, A:G.11, A:G.76, A:S.82, A:D.100, A:A.101, A:A.102 Water bridges: A:A.9, A:G.11, A:G.11, A:G.11, A:K.22, A:K.22, A:K.22 Salt bridges: A:K.22, A:K.204 C5P.2: 14 residues within 4Å: Chain B: P.8, A.9, A.10, G.11, S.12, G.13, E.14, K.22, G.76, V.77, D.78, R.79, S.82, D.100 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:A.10, B:S.12, B:G.13, B:G.76, B:S.82, B:D.100 Water bridges: B:G.11, B:S.12, B:K.22 Salt bridges: B:K.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bjorkelid, C. et al., Structural and Functional Studies on Mycobacterial Ispd Enzymes. Acta Crystallogr.,Sect.D (2011)

Release Date

2011-04-27

Peptides

2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE

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