SMTL ID : 2xwy.1

Structure of MK-3281, a Potent Non-Nucleoside Finger-Loop Inhibitor, in complex with the Hepatitis C Virus NS5B Polymerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

monomer

Ligands

1 x IB8: (7R)-14-cyclohexyl-7-{[2-(dimethylamino)ethyl](methyl)amino}-7,8-dihydro-6H-indolo[1,2-e][1,5]benzoxazocine-11-carboxylic acid(Non-covalent)

IB8.1: 12 residues within 4Å: Chain A: V.38, L.393, A.396, A.397, I.425, H.429, F.430, L.493, G.494, V.495, P.496, R.504 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.38, A:L.393, A:A.396, A:A.397, A:I.425, A:H.429, A:F.430, A:L.493, A:V.495, A:P.496 Salt bridges: A:R.504

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.221, T.222, D.319 Ligands: MN.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.221, A:T.222, A:D.319, H2O.5 MN.3: 4 residues within 4Å: Chain A: D.221, D.319, D.320 Ligands: MN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.221, A:D.319, A:D.320, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narjes, F. et al., Discovery of (7R)-14-Cyclohexyl-7-{[2-(Dimethylamino)Ethyl] (Methyl)Amino}-7,8-Dihydro-6H-Indolo[1,2-E][1,5] Benzoxazocine -11-Carboxylic Acid (Mk-3281), a Potent and Orally Bioavailable Finger-Loop Inhibitor of the Hepatitis C Virus Ns5B Polymerase. J.Med.Chem. (2011)

Release Date

2010-12-22

Peptides

RNA-DIRECTED RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-DIRECTED RNA POLYMERASE

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