- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLU: GLUTAMIC ACID(Non-covalent)
- 2 x 1ND: 1-[4-(1-PYRROLIDINYLCARBONYL)PHENYL]-3-(TRIFLUOROMETHYL)-4,5,6,7-TETRAHYDRO-1H-INDAZOLE(Non-covalent)
1ND.2: 20 residues within 4Å:- Chain A: K.133, P.134, F.135, M.136, S.137, S.246, K.247, L.268, S.271
- Chain B: I.121, P.134, F.135, M.136, S.137, S.246, K.247, G.248, S.271, L.276
- Ligands: 1ND.8
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:P.134, B:P.134, B:P.134, B:L.276
- Water bridges: A:S.137, A:S.246, A:K.247, B:G.248
- Halogen bonds: A:S.271
1ND.8: 20 residues within 4Å:- Chain A: I.121, P.134, F.135, M.136, S.137, S.246, K.247, G.248, S.271, L.276
- Chain B: K.133, P.134, F.135, M.136, S.137, S.246, K.247, L.268, S.271
- Ligands: 1ND.2
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:P.134, A:P.134, A:P.134, A:L.276
- Water bridges: B:S.137, B:S.246, B:K.247, A:G.248
- Halogen bonds: B:S.271
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 6 residues within 4Å:- Chain A: R.192, A.194, E.195, S.197, F.199
- Ligands: ZN.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:A.194, A:S.197
- Water bridges: A:A.194, A:V.198
SO4.9: 6 residues within 4Å:- Chain B: R.192, A.194, E.195, S.197, F.199
- Ligands: ZN.10
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:A.194, B:S.197
- Water bridges: B:A.194, B:V.198
- 6 x ZN: ZINC ION(Non-covalent)
ZN.4: 2 residues within 4Å:- Chain A: E.195
- Ligands: SO4.3
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.195, A:E.195
ZN.5: 3 residues within 4Å:- Chain A: K.49, H.52, E.59
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:H.52, A:E.59
ZN.6: 4 residues within 4Å:- Chain A: E.71, K.74, H.75, L.270
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.71, A:H.75, H2O.198
ZN.10: 2 residues within 4Å:- Chain B: E.195
- Ligands: SO4.9
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.195, B:E.195
ZN.11: 3 residues within 4Å:- Chain B: K.49, H.52, E.59
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:H.52, B:E.59
ZN.12: 4 residues within 4Å:- Chain B: E.71, K.74, H.75, L.270
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.71, B:H.75, H2O.396
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, S.E. et al., Integration of Lead Optimization with Crystallography for a Membrane-Bound Ion Channel Target: Discovery of a New Class of Ampa Receptor Positive Allosteric Modulators. J.Med.Chem. (2011)
- Release Date
- 2011-04-06
- Peptides
- GLUTAMATE RECEPTOR 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLU: GLUTAMIC ACID(Non-covalent)
- 2 x 1ND: 1-[4-(1-PYRROLIDINYLCARBONYL)PHENYL]-3-(TRIFLUOROMETHYL)-4,5,6,7-TETRAHYDRO-1H-INDAZOLE(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ward, S.E. et al., Integration of Lead Optimization with Crystallography for a Membrane-Bound Ion Channel Target: Discovery of a New Class of Ampa Receptor Positive Allosteric Modulators. J.Med.Chem. (2011)
- Release Date
- 2011-04-06
- Peptides
- GLUTAMATE RECEPTOR 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B