SMTL ID : 2xxm.1

Crystal structure of the HIV-1 capsid protein C-terminal domain in complex with a camelid VHH and the CAI peptide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Chain B: D.77 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.77 ACT.2: 2 residues within 4Å: Chain A: E.42 Chain B: R.54 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.54 Hydrogen bonds: A:E.42, A:E.42 ACT.3: 2 residues within 4Å: Chain A: G.63 Chain C: D.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Igonet, S. et al., Targeting HIV-1 Virion Formation with Nanobodies -Implications for the Design of Assembly Inhibitors. To be Published

Release Date

2011-10-12

Peptides

CAPSID PROTEIN P24: A
CAMELID VHH 9: B
INHIBITOR OF CAPSID ASSEMBLY: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
T

CAPSID PROTEIN P24

CAMELID VHH 9

INHIBITOR OF CAPSID ASSEMBLY

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