SMTL ID : 2xxz.2 (1 other biounit)

Crystal structure of the human JMJD3 jumonji domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.217, E.219, H.297 Ligands: 8XQ.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.217, A:E.219, H2O.4, H2O.6

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.20, R.21, F.24, Y.327 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.20, A:R.21

1 x 8XQ: 8-hydroxyquinoline-5-carboxylic acid(Non-covalent)

8XQ.3: 13 residues within 4Å: Chain A: F.155, Y.206, K.208, T.214, H.217, E.219, S.225, N.227, W.237, H.297, V.299, N.307 Ligands: NI.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.206, A:T.214, A:W.237, A:V.299 Hydrogen bonds: A:S.225, A:N.227 Water bridges: A:T.214 Salt bridges: A:K.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Che, K.H. et al., Crystal Structure of the Human Jmjd3 Jumonji Domain. To be Published

Release Date

2010-11-24

Peptides

LYSINE-SPECIFIC DEMETHYLASE 6B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

LYSINE-SPECIFIC DEMETHYLASE 6B

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