SMTL ID : 2xy6.1

Crystal structure of a salicylic aldehyde basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.382 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.382 SO4.2: 3 residues within 4Å: Chain A: H.387, R.407, K.411 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.411, A:K.411 Salt bridges: A:R.407, A:K.411

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 9 residues within 4Å: Chain A: E.26, V.27, V.28, E.30, R.80, D.130, Y.134, R.140, K.155 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.80 Water bridges: A:V.27, A:K.155 Salt bridges: A:R.80, A:K.155

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.4: 5 residues within 4Å: Chain A: K.86, W.87, K.88, G.89, F.195 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaul, C. et al., Reversible Bond Formation Enables the Replication and Amplification of a Crosslinking Salen Complex as an Orthogonal Base Pair. Nature Chem. (2011)

Release Date

2011-07-27

Peptides

DNA POLYMERASE I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA POLYMERASE I