SMTL ID : 2xy7.1

Crystal structure of a salicylic aldehyde base in the pre-insertion site of fragment DNA polymerase I from Bacillus stearothermophilus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 9 residues within 4Å: Chain A: E.29, N.30, Y.31, D.76, R.79, L.99, D.112, I.309, N.311 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.79, A:D.112, A:N.311, A:N.311, A:E.29, A:R.79

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: M.3, A.4, R.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.4 Salt bridges: A:R.47 SO4.3: 1 residues within 4Å: Chain A: R.523 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.523

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaul, C. et al., Reversible Bond Formation Enables the Replication and Amplification of a Crosslinking Salen Complex as an Orthogonal Base Pair. Nature Chem. (2011)

Release Date

2011-07-27

Peptides

DNA POLYMERASE I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA POLYMERASE I