SMTL ID : 2xyc.1

CRYSTAL STRUCTURE OF NCAM2 IGIV-FN3I

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: L.7, N.9, Y.94 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.9 NAG.2: 6 residues within 4Å: Chain A: P.117, I.118, N.119, Y.152, I.159, E.161 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.117 Hydrogen bonds: A:N.119, A:E.161 NAG.3: 5 residues within 4Å: Chain A: R.135, N.174, T.176, F.185, E.187 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.185 Hydrogen bonds: A:N.174 Water bridges: A:E.187

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 6 residues within 4Å: Chain A: Y.111, A.193, D.194, V.195, P.196, S.197 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.194, A:S.197, A:S.197, A:S.197 Water bridges: A:Y.111, A:D.279, A:D.279 Salt bridges: A:D.194

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 3 residues within 4Å: Chain A: N.148, S.166, N.168 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.166, A:N.168, A:N.168, A:D.169 Water bridges: A:N.148, A:N.148, A:N.148 PO4.6: 3 residues within 4Å: Chain A: R.136, G.171, R.172 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.172 Water bridges: A:R.136, A:R.172 Salt bridges: A:R.136 PO4.7: 6 residues within 4Å: Chain A: R.136, L.141, T.146, N.168, D.169, Y.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.168, A:N.168, A:D.169 Salt bridges: A:R.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kulahin, N. et al., Structural Model and Trans-Interaction of the Entire Ectodomain of the Olfactory Cell Adhesion Molecule. Structure (2011)

Release Date

2011-02-23

Peptides

NEURAL CELL ADHESION MOLECULE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NEURAL CELL ADHESION MOLECULE 2