SMTL ID : 2xym.1

HCV-JFH1 NS5B T385A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

14 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 1 residues within 4Å: Chain A: R.114 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.114 PO4.2: 1 residues within 4Å: Chain A: R.231 6 PLIP interactions: 6 interactions with chain A Water bridges: A:Q.58, A:Q.58, A:R.231, A:R.231, A:R.231 Salt bridges: A:R.231 PO4.3: 1 residues within 4Å: Chain A: H.480 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.480, A:R.484 Salt bridges: A:H.480 PO4.4: 5 residues within 4Å: Chain A: Y.4, V.52, L.159, D.225, S.282 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.159, A:D.225, A:S.282 Water bridges: A:Y.4, A:Y.4, A:S.226, A:S.282 PO4.5: 5 residues within 4Å: Chain A: R.48, K.51, T.221, R.222, C.223 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.48, A:C.223 Water bridges: A:F.224, A:F.224, A:F.224 Salt bridges: A:K.51 PO4.6: 7 residues within 4Å: Chain A: E.19, C.39, T.40, T.41, K.43, S.44, K.154 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.19, A:T.41 Water bridges: A:S.44, A:S.44, A:K.154 Salt bridges: A:K.154 PO4.7: 6 residues within 4Å: Chain A: R.523, Y.524, K.535, L.536, T.537 Chain B: K.77 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.524, A:T.537 Water bridges: A:R.523, A:T.537, B:K.77 PO4.8: 1 residues within 4Å: Chain B: R.114 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.114 PO4.9: 1 residues within 4Å: Chain B: R.231 6 PLIP interactions: 6 interactions with chain B Water bridges: B:Q.58, B:Q.58, B:R.231, B:R.231, B:R.231 Salt bridges: B:R.231 PO4.10: 1 residues within 4Å: Chain B: H.480 3 PLIP interactions: 3 interactions with chain B Water bridges: B:H.480, B:R.484 Salt bridges: B:H.480 PO4.11: 5 residues within 4Å: Chain B: Y.4, V.52, L.159, D.225, S.282 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.4, B:L.159, B:S.282 Water bridges: B:Y.4, B:S.226, B:S.282 PO4.12: 5 residues within 4Å: Chain B: R.48, K.51, T.221, R.222, C.223 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.48, B:C.223 Water bridges: B:F.224, B:F.224, B:F.224 Salt bridges: B:K.51 PO4.13: 7 residues within 4Å: Chain B: E.19, C.39, T.40, T.41, K.43, S.44, K.154 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.41 Water bridges: B:S.44, B:S.44, B:K.154 Salt bridges: B:K.154 PO4.14: 6 residues within 4Å: Chain A: K.77 Chain B: R.523, Y.524, K.535, L.536, T.537 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.524, B:Y.524, B:T.537 Water bridges: B:R.523, B:T.537, B:T.537, A:K.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmitt, M. et al., A Comprehensive Structure-Function Comparison of Hepatitis C Virus Strains Jfh1 and J6 Polymerases Reveals a Key Residue Stimulating Replication in Cell Culture Across Genotypes. J.Virol. (2011)

Release Date

2011-01-12

Peptides

RNA-DIRECTED RNA POLYMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RNA-DIRECTED RNA POLYMERASE