SMTL ID : 2xyu.1

Crystal structure of EphA4 kinase domain in complex with VUF 12058

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: F.107, V.109, M.207, Y.209, D.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.107 Water bridges: A:M.236, A:D.237, A:D.237 GOL.2: 3 residues within 4Å: Chain A: S.130, Y.131, V.132 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.132, A:V.132 Water bridges: A:Y.131, A:V.132 GOL.3: 4 residues within 4Å: Chain A: R.231, L.247, W.250, Q.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.250, A:Q.251 GOL.4: 4 residues within 4Å: Chain A: I.240, H.243, Q.244, L.247 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.243 GOL.5: 4 residues within 4Å: Chain A: R.178, R.212, S.218, N.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.178, A:R.212, A:N.219 GOL.6: 2 residues within 4Å: Chain A: C.81, K.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.82

1 x Q9G: 5-(5-FLUORO-2-METHYLPHENYL)-6,7,8,9-TETRAHYDRO-3H-PYRAZOLO[3,4-C]ISOQUINOLIN-1-AMINE(Non-covalent)

Q9G.7: 14 residues within 4Å: Chain A: V.24, A.40, K.42, E.59, M.63, T.88, E.89, Y.90, M.91, G.94, L.142, S.152, D.153, F.154 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.24, A:K.42, A:K.42, A:T.88, A:L.142, A:L.142 Hydrogen bonds: A:T.88, A:E.89, A:M.91, A:M.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Van Linden, O.P. et al., Fragment Based Lead Discovery of Small Molecule Inhibitors for the Epha4 Receptor Tyrosine Kinase. Eur.J.Med.Chem. (2012)

Release Date

2011-11-30

Peptides

EPHRIN TYPE-A RECEPTOR 4,: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EPHRIN TYPE-A RECEPTOR 4,