SMTL ID : 2xz3.1

BLV TM hairpin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-trimer

Ligands

3 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:E.154, A:Y.156, A:R.345 Water bridges: A:E.45 GLC-GLC.9: 16 residues within 4Å: Chain B: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:W.63, B:R.67, B:R.67, B:E.154, B:Y.156, B:R.345 Water bridges: B:E.45 GLC-GLC.17: 16 residues within 4Å: Chain C: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:W.63, C:R.67, C:R.67, C:E.154, C:Y.156, C:R.345 Water bridges: C:E.45

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: I.441, Q.442, N.443, D.444 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: W.159, A.163, K.257, P.258, F.259, E.329 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain A: E.23, V.24, K.27, E.289, G.290, A.293 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: A.97, Y.177, I.330, M.331, P.332, N.333 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: R.413, C.436, C.437, F.438, L.439 Chain C: V.408 Ligand excluded by PLIP EDO.7: 9 residues within 4Å: Chain A: E.4, G.55, D.56, G.57, P.58, D.59, N.268, S.271, P.272 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain B: I.441, Q.442, N.443, D.444 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain B: W.159, A.163, K.257, P.258, F.259, E.329 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain B: E.23, V.24, K.27, E.289, G.290, A.293 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain B: A.97, Y.177, I.330, M.331, P.332, N.333 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain A: V.408 Chain B: R.413, C.436, C.437, F.438, L.439 Ligand excluded by PLIP EDO.15: 9 residues within 4Å: Chain B: E.4, G.55, D.56, G.57, P.58, D.59, N.268, S.271, P.272 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain C: I.441, Q.442, N.443, D.444 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain C: W.159, A.163, K.257, P.258, F.259, E.329 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain C: E.23, V.24, K.27, E.289, G.290, A.293 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain C: A.97, Y.177, I.330, M.331, P.332, N.333 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain B: V.408 Chain C: R.413, C.436, C.437, F.438, L.439 Ligand excluded by PLIP EDO.23: 9 residues within 4Å: Chain C: E.4, G.55, D.56, G.57, P.58, D.59, N.268, S.271, P.272 Ligand excluded by PLIP

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 5 residues within 4Å: Chain A: N.412 Chain B: N.412 Chain C: N.412 Ligands: CL.16, CL.24 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain A: N.412 Chain B: N.412 Chain C: N.412 Ligands: CL.8, CL.24 Ligand excluded by PLIP CL.24: 5 residues within 4Å: Chain A: N.412 Chain B: N.412 Chain C: N.412 Ligands: CL.8, CL.16 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lamb, D. et al., Charge-Surrounded Pockets and Electrostatic Interactions with Small Ions Modulate the Activity of Retroviral Fusion Proteins. Plos Pathog. (2011)

Release Date

2011-03-02

Peptides

MALTOSE ABC TRANSPORTER PERIPLASMIC PROTEIN, ENVELOPE GLYCOPROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

MALTOSE ABC TRANSPORTER PERIPLASMIC PROTEIN, ENVELOPE GLYCOPROTEIN