SMTL ID : 2xzg.1

Clathrin Terminal Domain Complexed with Pitstop 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 1 residues within 4Å: Chain A: F.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.1, A:F.1 Water bridges: A:M.2 PEG.2: 8 residues within 4Å: Chain A: W.165, L.184, S.186, R.189, V.191, Q.193, V.234, G.235 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.186, A:R.189, A:V.191, A:Q.193, A:G.235 Water bridges: A:E.233

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: T.119, H.130, S.132, V.140, M.142 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.130, A:S.132, A:Q.163 Water bridges: A:T.119, A:H.130, A:S.137

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 4 residues within 4Å: Chain A: K.228, A.248, V.249, D.250 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.249 Water bridges: A:L.229 Salt bridges: A:K.228

1 x VH1: 2-(4-AMINOBENZYL)-1,3-DIOXO-2,3-DIHYDRO-1H-BENZO[DE]ISOQUINOLINE-5-SULFONATE(Non-covalent)

VH1.5: 12 residues within 4Å: Chain A: I.53, I.63, R.65, I.67, S.68, I.81, L.83, Q.90, F.92, I.94, K.97, S.98 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.53, A:R.65, A:I.67, A:L.83, A:I.94, A:I.94 Hydrogen bonds: A:Q.90 pi-Stacking: A:F.92, A:F.92 pi-Cation interactions: A:R.65, A:R.65, A:R.65, A:R.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Von Kleist, L. et al., Role of the Clathrin Terminal Domain in Regulating Coated Pit Dynamics Revealed by Small Molecule Inhibition. Cell(Cambridge,Mass.) (2011)

Release Date

2011-08-17

Peptides

CLATHRIN HEAVY CHAIN 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CLATHRIN HEAVY CHAIN 1