SMTL ID : 2y1d.1

X-ray structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase, DXR, Rv2870c, from Mycobacterium tuberculosis, in complex with a 3,4- dichlorophenyl-substituted fosmidomycin analogue and manganese.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

1 x 34F: (1S)-1-(3,4-DICHLOROPHENYL)-3-[FORMYL(HYDROXY)AMINO]PROPYL}PHOSPHONIC ACID(Non-covalent)

34F.1: 12 residues within 4Å: Chain A: D.160, S.161, E.162, A.185, S.186, S.222, N.227, K.228, E.231, S.254, P.274 Ligands: MN.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.137, A:S.161, A:E.162, A:S.186, A:N.227, A:K.228, A:K.228 Water bridges: A:G.187, A:G.187

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.160, E.162, E.231 Ligands: 34F.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.160, A:E.162, A:E.231 MN.3: 3 residues within 4Å: Chain B: D.160, E.162, E.231 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.160, B:D.160, B:E.162, B:E.231, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andaloussi, M. et al., Design, Synthesis and X-Ray Crystallographic Studies of Alpha-Aryl Substituted Fosmidomycin Analogues as Inhibitors of Mycobacterium Tuberculosis 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase. J.Med.Chem (2011)

Release Date

2011-06-29

Peptides

1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE

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