SMTL ID : 2y1w.1

CRYSTAL STRUCTURE OF COACTIVATOR ASSOCIATED ARGININE METHYLTRANSFERASE 1 (CARM1) IN COMPLEX WITH SINEFUNGIN AND INDOLE INHIBITOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 22 residues within 4Å: Chain A: Y.15, F.16, Y.19, Q.25, M.28, R.34, G.58, C.59, G.60, I.63, L.64, E.80, A.81, S.82, G.106, K.107, V.108, E.109, E.123, M.134, S.137 Ligands: 849.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.25, A:G.58, A:A.81, A:V.108, A:E.109, A:E.123, A:S.137 Water bridges: A:R.6, A:G.62 Salt bridges: A:R.34 pi-Stacking: A:F.16, A:F.16 SFG.3: 22 residues within 4Å: Chain B: F.3, Y.15, F.16, Y.19, Q.25, M.28, R.34, G.58, C.59, G.60, I.63, L.64, E.80, A.81, G.106, K.107, V.108, E.109, E.123, M.134, S.137 Ligands: 849.4 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Q.25, B:G.58, B:G.60, B:A.81, B:V.108, B:E.109, B:E.123, B:S.137 Water bridges: B:R.6, B:G.62, B:E.123 Salt bridges: B:R.34 pi-Stacking: B:F.16 SFG.5: 22 residues within 4Å: Chain C: F.3, Y.15, F.16, Y.19, Q.25, M.28, R.34, G.58, C.59, G.60, I.63, L.64, E.80, A.81, G.106, K.107, V.108, E.109, E.123, M.134, S.137 Ligands: 849.6 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:Q.25, C:G.58, C:G.60, C:A.81, C:V.108, C:E.109, C:E.123, C:S.137 Water bridges: C:R.6, C:E.123 Salt bridges: C:R.34 pi-Stacking: C:F.16, C:F.16 SFG.7: 23 residues within 4Å: Chain D: F.3, Y.15, F.16, Y.19, Q.25, M.28, R.34, G.58, C.59, G.60, I.63, L.64, E.80, A.81, S.82, G.106, K.107, V.108, E.109, E.123, M.134, S.137 Ligands: 849.8 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:Q.25, D:G.58, D:A.81, D:V.108, D:E.109, D:E.123, D:S.137 Water bridges: D:R.6, D:Q.25, D:E.123 Salt bridges: D:R.34 pi-Stacking: D:F.16, D:F.16

4 x 849: 2-{4-[3-FLUORO-2-(2-METHOXYPHENYL)-1H-INDOL-5-YL] PIPERIDIN-1-YL}-N-METHYLETHANAMINE(Non-covalent)

849.2: 19 residues within 4Å: Chain A: S.11, Q.14, Y.15, F.18, Y.19, M.28, E.123, P.124, M.125, Y.127, N.131, E.132, M.134, H.280, W.281, R.311, Q.312, S.313 Ligands: SFG.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Q.14, A:Y.15, A:F.18, A:Y.127, A:Y.127 Hydrogen bonds: A:M.125, A:N.131 Salt bridges: A:E.123, A:E.132 pi-Stacking: A:Y.15 849.4: 19 residues within 4Å: Chain B: S.11, Q.14, Y.15, F.18, Y.19, M.28, E.123, P.124, M.125, Y.127, N.131, E.132, M.134, H.280, W.281, R.311, Q.312, S.313 Ligands: SFG.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Q.14, B:Y.15, B:F.18, B:Y.127, B:Y.127 Hydrogen bonds: B:E.123, B:N.131 Salt bridges: B:E.123, B:E.132 pi-Stacking: B:Y.15 849.6: 19 residues within 4Å: Chain C: S.11, Q.14, Y.15, F.18, Y.19, M.28, E.123, P.124, M.125, Y.127, N.131, E.132, M.134, H.280, W.281, R.311, Q.312, S.313 Ligands: SFG.5 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:Y.15, C:F.18, C:Y.127, C:Y.127 Hydrogen bonds: C:Y.19, C:E.123, C:N.131 Salt bridges: C:E.123, C:E.132 pi-Stacking: C:Y.15 849.8: 19 residues within 4Å: Chain D: S.11, Q.14, Y.15, F.18, Y.19, M.28, E.123, P.124, M.125, Y.127, N.131, E.132, M.134, H.280, W.281, R.311, Q.312, S.313 Ligands: SFG.7 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:Q.14, D:Y.15, D:F.18, D:Y.127, D:Y.127 Hydrogen bonds: D:Y.19, D:E.123, D:N.131 Salt bridges: D:E.123, D:E.132 pi-Stacking: D:Y.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sack, J.S. et al., Structural Basis for Carm1 Inhibition by Indole and Pyrazole Inhibitors. Biochem.J. (2011)

Release Date

2011-03-23

Peptides

HISTONE-ARGININE METHYLTRANSFERASE CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

HISTONE-ARGININE METHYLTRANSFERASE CARM1

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