SMTL ID : 2y2f.1

Crystal structure of Yersinia pestis YopH in complex with an aminooxy- containing platform compound for inhibitor design

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x YI1: [4-[3-(DIFLUORO-PHOSPHONO-METHYL)PHENYL]PHENYL]METHOXYAZANIUM(Non-covalent)

YI1.1: 14 residues within 4Å: Chain A: F.67, D.69, I.70, D.194, Q.195, C.241, R.242, A.243, G.244, V.245, G.246, R.247, I.281, Q.284 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.67, A:I.70, A:I.70, A:A.243, A:I.281 Hydrogen bonds: A:D.69, A:R.242, A:A.243, A:G.244, A:V.245, A:G.246, A:R.247, A:R.247, A:R.247 Water bridges: A:D.69, A:D.69, A:Q.195 Halogen bonds: A:Q.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bahta, M. et al., Utilization of Nitrophenylphosphates and Oxime-Based Ligation for the Development of Nanomolar Affinity Inhibitors of the Yersinia Pestis Outer Protein H (Yoph) Phosphatase. J.Med.Chem. (2011)

Release Date

2011-03-16

Peptides

PROTEIN-TYROSINE PHOSPHATASE YOPH: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN-TYROSINE PHOSPHATASE YOPH

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