SMTL ID : 2y38.1

LAMININ ALPHA5 CHAIN N-TERMINAL FRAGMENT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: S.27, E.107, V.108, N.109, E.139, R.226, R.228 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: L.208, N.209, Y.212 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.209

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 9 residues within 4Å: Chain A: H.12, H.119, R.265, C.266, V.267, C.268, H.269, G.270 Ligands: PO4.4 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:C.266, A:C.268, A:H.269, A:G.270 Salt bridges: A:H.12, A:H.119, A:R.265 PO4.4: 7 residues within 4Å: Chain A: H.119, R.217, K.221, V.267, H.269 Ligands: PO4.3, PO4.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:C.268, A:H.269 Salt bridges: A:H.119, A:R.217, A:K.221, A:H.269 PO4.5: 4 residues within 4Å: Chain A: R.217, K.221, H.269 Ligands: PO4.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.218 Salt bridges: A:R.217, A:K.221, A:H.269 PO4.6: 7 residues within 4Å: Chain A: Q.116, V.117, C.266, V.267, L.286, C.288, G.297 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.267, A:L.286 PO4.7: 5 residues within 4Å: Chain A: G.296, G.297, S.298, D.300, R.301 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.298, A:D.300, A:D.300, A:R.301 PO4.8: 4 residues within 4Å: Chain A: G.368, I.369, E.372, R.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.369, A:E.372 Salt bridges: A:R.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hussain, S.A. et al., Determinants of Laminin Polymerisation Revealed by the Crystal Structure of the Alpha5 Chain Amino-Terminal Region. Embo Rep. (2011)

Release Date

2011-02-23

Peptides

LAMININ SUBUNIT ALPHA-5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LAMININ SUBUNIT ALPHA-5