SMTL ID : 2y53.1

Crystal structure of E257Q mutant of the box pathway encoded ALDH from Burkholderia xenovorans LB400

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: R.245, L.257, N.258, V.259, G.495, G.496, G.497 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.245, A:R.245, A:V.259, A:G.496 GOL.2: 9 residues within 4Å: Chain A: V.103, G.107, F.163, W.166, K.298, T.300, G.480, N.481, V.482 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.166, A:T.300, A:T.300, A:N.481, A:V.482 GOL.5: 9 residues within 4Å: Chain B: V.103, G.107, F.163, W.166, K.298, T.300, G.480, N.481, V.482 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:W.166, B:T.300, B:T.300, B:G.480, B:V.482 GOL.6: 7 residues within 4Å: Chain B: R.245, L.257, N.258, V.259, G.495, G.496, G.497 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.245, B:R.245, B:V.259, B:G.496

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Covalent)(Non-covalent)

NAP.3: 21 residues within 4Å: Chain A: I.158, N.159, A.160, F.161, N.162, K.185, A.187, T.188, G.217, S.219, F.234, T.235, G.236, S.237, A.238, T.240, A.261, D.262, C.299, E.403, F.405 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:A.261, A:D.262 Hydrogen bonds: A:N.159, A:N.162, A:T.188, A:T.188, A:S.219, A:S.237, A:A.238, A:T.240, A:E.403 Water bridges: A:A.189, A:G.217, A:S.219, A:S.237, A:D.239 Salt bridges: A:K.185 NAP.4: 20 residues within 4Å: Chain B: I.158, A.160, F.161, K.185, A.187, T.188, G.217, S.218, S.219, L.223, F.234, G.236, S.237, T.240, Q.260, A.261, D.262, C.299, E.403, F.405 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:F.405, B:F.405 Hydrogen bonds: B:F.161, B:T.188, B:G.217, B:S.219, B:S.219, B:G.236, B:S.237, B:Q.260, B:Q.260 Water bridges: B:N.159, B:P.186, B:T.188, B:T.240, B:T.240 Salt bridges: B:K.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bains, J. et al., Elucidating the Reaction Mechanism of the Benzoate Oxidation Pathway Encoded Aldehyde Dehydrogenase from Burkholderia Xenovorans Lb400. Protein Sci. (2011)

Release Date

2011-06-01

Peptides

ALDEHYDE DEHYDROGENASE (BOX PATHWAY): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALDEHYDE DEHYDROGENASE (BOX PATHWAY)