- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.59 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x V11: [(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENYL-ETHYL]-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 2 residues within 4Å:- Chain A: K.40
- Chain E: R.95
Ligand excluded by PLIPCL.3: 3 residues within 4Å:- Chain B: V.106, I.116
- Ligands: V11.1
Ligand excluded by PLIPCL.9: 2 residues within 4Å:- Chain A: R.95
- Chain B: K.40
Ligand excluded by PLIPCL.10: 3 residues within 4Å:- Chain C: V.106, I.116
- Ligands: V11.8
Ligand excluded by PLIPCL.11: 1 residues within 4Å:- Chain B: Y.147
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain B: R.95
- Chain C: K.40
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain C: V.146
- Chain D: V.106, I.116
- Ligands: V11.15
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain C: R.95
- Chain D: K.40
Ligand excluded by PLIPCL.24: 2 residues within 4Å:- Chain D: Q.36, S.165
Ligand excluded by PLIPCL.25: 4 residues within 4Å:- Chain D: V.146
- Chain E: V.106, I.116
- Ligands: V11.22
Ligand excluded by PLIPCL.33: 2 residues within 4Å:- Chain D: R.95
- Chain E: K.40
Ligand excluded by PLIPCL.34: 3 residues within 4Å:- Chain A: V.106, I.116
- Ligands: V11.32
Ligand excluded by PLIP- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: K.141, Q.182, Q.184
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.182, A:Q.184
- Salt bridges: A:K.141
SO4.5: 3 residues within 4Å:- Chain A: Q.1, A.2, N.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.1, A:A.2, A:N.3, A:N.3, A:L.4
SO4.12: 6 residues within 4Å:- Chain A: C.125, D.126, T.137, C.138
- Chain B: Y.167, S.169
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.169, B:S.169, A:D.126
SO4.13: 3 residues within 4Å:- Chain B: Q.1, A.2, N.3
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.1, B:A.2, B:N.3, B:N.3
SO4.18: 3 residues within 4Å:- Chain C: Q.1, A.2, N.3
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:Q.1, C:A.2, C:N.3, C:N.3
SO4.19: 6 residues within 4Å:- Chain C: D.25, P.26, L.27, K.59, L.60, N.61
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.25, C:K.59, C:N.61, C:N.61
SO4.26: 5 residues within 4Å:- Chain C: C.125, D.126, C.138
- Chain D: Y.167, S.169
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:D.126, C:T.137, D:S.169, D:S.169
SO4.27: 3 residues within 4Å:- Chain D: K.141, Q.182, N.197
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.182, D:N.197
- Salt bridges: D:K.141
SO4.28: 3 residues within 4Å:- Chain D: Q.1, A.2, N.3
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Q.1, D:A.2, D:N.3, D:N.3
SO4.35: 4 residues within 4Å:- Chain E: K.141, Q.182, Q.184, N.197
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:Q.182, E:Q.182, E:Q.184, E:N.197
- Salt bridges: E:K.141
SO4.36: 4 residues within 4Å:- Chain D: C.125, D.126
- Chain E: Y.167, S.169
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:Y.167, E:S.169, E:S.169, D:D.126
SO4.37: 3 residues within 4Å:- Chain E: Q.1, A.2, N.3
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Q.1, E:A.2, E:N.3, E:N.3
SO4.38: 5 residues within 4Å:- Chain D: Y.91, S.92
- Chain E: Q.36, S.165, Y.167
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:Q.36
SO4.39: 5 residues within 4Å:- Chain A: Y.167, S.169
- Chain E: C.125, D.126, T.137
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:Y.167, A:S.169, A:S.169, E:D.126
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 3 residues within 4Å:- Chain A: T.158, D.159, Q.160
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.157, A:D.159
GOL.7: 1 residues within 4Å:- Chain A: R.205
No protein-ligand interaction detected (PLIP)GOL.14: 7 residues within 4Å:- Chain B: Y.186, S.187, C.188
- Chain C: Y.53, D.162, S.164, S.165
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.187, B:C.188
GOL.20: 9 residues within 4Å:- Chain C: Y.186, S.187, C.188
- Chain D: T.34, Y.53, D.162, S.164, S.165
- Ligands: V11.15
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain D- Hydrogen bonds: C:S.187, C:C.188, D:Y.53, D:S.164, D:S.164, D:S.165
GOL.21: 6 residues within 4Å:- Chain C: S.93, R.95, P.96, V.97
- Chain D: L.100, S.101
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.93, C:S.93, C:V.97
GOL.29: 4 residues within 4Å:- Chain D: D.157, T.158, D.159, Q.160
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:T.158, D:Q.160
GOL.30: 4 residues within 4Å:- Chain D: M.17, I.83, W.84, T.85
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:I.83, D:T.85, D:T.85
GOL.31: 3 residues within 4Å:- Chain D: S.79, P.102, Q.103
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.79, D:Q.103
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Edink, E. et al., Fragment Growing Induces Conformational Changes in Acetylcholine-Binding Protein: A Structural and Thermodynamic Analysis. J.Am.Chem.Soc. (2011)
- Release Date
- 2011-06-15
- Peptides
- SOLUBLE ACETYLCHOLINE RECEPTOR: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.59 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x V11: [(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENYL-ETHYL]-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Edink, E. et al., Fragment Growing Induces Conformational Changes in Acetylcholine-Binding Protein: A Structural and Thermodynamic Analysis. J.Am.Chem.Soc. (2011)
- Release Date
- 2011-06-15
- Peptides
- SOLUBLE ACETYLCHOLINE RECEPTOR: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E