SMTL ID : 2y5s.1

Crystal structure of Burkholderia cenocepacia dihydropteroate synthase complexed with 7,8-dihydropteroate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x 78H: 7,8-DIHYDROPTEROATE(Non-covalent)

78H.1: 17 residues within 4Å: Chain A: T.70, R.71, P.72, D.103, N.122, I.124, C.144, M.146, D.193, G.197, F.198, L.229, G.231, K.235, S.236, R.270 Ligands: EDO.12 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:R.71, A:F.198, A:K.235, A:K.235 Hydrogen bonds: A:T.70, A:T.70, A:D.103, A:N.122, A:N.122, A:G.231, A:K.235, A:S.236 Water bridges: A:D.193, A:N.206, A:G.231, A:R.250 Salt bridges: A:D.193 78H.14: 18 residues within 4Å: Chain B: T.70, R.71, P.72, D.103, N.122, I.124, C.144, M.146, D.193, G.197, F.198, L.229, G.231, K.235, S.236, R.270 Ligands: EDO.17, EDO.18 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:R.71, B:F.198, B:K.235, B:K.235 Hydrogen bonds: B:T.70, B:T.70, B:D.103, B:N.122, B:N.122, B:G.231, B:K.235, B:S.236 Water bridges: B:D.193, B:G.231, B:M.237 Salt bridges: B:D.193

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: A.201, V.202, V.203, D.204 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain B: V.203, D.204 Ligand excluded by PLIP

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: P.160, Y.162, A.201, D.205 Ligands: EDO.9 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: A.256, L.259, C.260 Chain B: L.259 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: R.128, H.147, M.148, L.149, G.150, F.172 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: K.200, A.201, V.202 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: R.128, F.172, A.175, R.176 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: V.251, A.252, A.276 Chain B: V.251, A.252, A.276 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain A: D.164, V.165, D.204, D.205, A.208 Chain B: R.294 Ligands: EDO.3 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: F.6, L.7, P.8, A.9, R.224, A.225 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: E.53, I.56, A.57 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: I.28, R.270, H.272 Ligands: 78H.1 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: R.71, Y.105, I.124, W.125, M.155 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain B: R.111, D.134 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: R.71, S.233, R.234, H.272 Ligands: 78H.14, EDO.18 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain B: R.234, S.236, R.250 Ligands: 78H.14, EDO.17 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain B: R.128, F.172, A.175, R.176 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain B: R.128, M.148, L.149, G.150, F.172 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morgan, R.E. et al., Crystal Structures of Burkholderia Cenocepacia Dihydropteroate Synthase in the Apo-Form and Complexed with the Product 7,8-Dihydropteroate. Bmc Struct.Biol. (2011)

Release Date

2011-01-26

Peptides

DIHYDROPTEROATE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DIHYDROPTEROATE SYNTHASE

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