SMTL ID : 2y5w.1

Crystal structure of Drosophila melanogaster kinesin-1 motor domain dimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: R.18, R.20, P.21, Q.93, T.94, S.95, S.96, G.97, K.98, T.99, H.100 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.18, A:S.95, A:S.96, A:G.97, A:K.98, A:T.99, A:H.100 Water bridges: A:T.99, A:T.99, A:T.99, A:D.238 Salt bridges: A:K.98 pi-Cation interactions: A:H.100, A:H.100 ADP.3: 12 residues within 4Å: Chain B: R.18, R.20, P.21, Q.93, T.94, S.95, S.96, G.97, K.98, T.99, H.100 Ligands: MG.4 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.18, B:S.95, B:S.96, B:G.97, B:K.98, B:T.99, B:H.100 Water bridges: B:R.18, B:K.98, B:T.99, B:T.99, B:T.99, B:S.208 Salt bridges: B:K.98 pi-Stacking: B:H.100, B:H.100

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.99 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.99, H2O.1, H2O.4 MG.4: 2 residues within 4Å: Chain B: T.99 Ligands: ADP.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaan, H.Y.K. et al., The Structure of the Kinesin-1 Motor-Tail Complex Reveals the Mechanism of Autoinhibition. Science (2011)

Release Date

2011-08-24

Peptides

KINESIN HEAVY CHAIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

KINESIN HEAVY CHAIN

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