SMTL ID : 2y6g.1

Cellopentaose binding mutated (X-2 L110F) CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC-BGC.1: 11 residues within 4Å: Chain A: D.29, N.31, F.69, Q.72, T.74, L.76, F.110, R.115, R.142, P.144, H.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.72, A:R.142, A:R.142 Water bridges: A:D.29

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: G.9, E.11, E.52, K.55, D.160 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.9, A:E.11, A:E.52, A:E.52, A:K.55 CA.3: 2 residues within 4Å: Chain A: A.22, W.28 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:A.22, H2O.2, H2O.2, H2O.2, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

von Schantz, L. et al., Structural basis for carbohydrate-binding specificity--a comparative assessment of two engineered carbohydrate-binding modules. Glycobiology (2012)

Release Date

2012-03-07

Peptides

XYLANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

XYLANASE

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