SMTL ID : 2y6l.1

Xylopentaose binding X-2 engineered mutated CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

1 x XYP- XYP- XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose(Non-covalent)

XYP-XYP-XYP-XYP-XYP.1: 9 residues within 4Å: Chain A: N.31, Q.72, L.110, E.112, R.115, H.117, R.142, P.144, H.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.31, A:Q.72, A:R.142, A:R.142

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: G.9, E.11, E.52, K.55, D.160 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.9, A:E.11, A:E.52, A:K.55, A:D.160 CA.3: 4 residues within 4Å: Chain A: A.22, E.23, W.28, D.29 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:A.22, A:W.28, A:D.29, H2O.2, H2O.3, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

von Schantz, L. et al., Structural basis for carbohydrate-binding specificity--a comparative assessment of two engineered carbohydrate-binding modules. Glycobiology (2012)

Release Date

2012-03-07

Peptides

XYLANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

XYLANASE

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